gRim: Graphical Interaction Models
Version 0.2-0

Provides the following types of models: Models for for contingency tables (i.e. log-linear models) Graphical Gaussian models for multivariate normal data (i.e. covariance selection models) Mixed interaction models.

AuthorSøren Højsgaard <sorenh@math.aau.dk>
Date of publication2017-03-31 12:45:47 UTC
MaintainerSøren Højsgaard <sorenh@math.aau.dk>
LicenseGPL (>= 2)
Version0.2-0
URL http://people.math.aau.dk/~sorenh/software/gR/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("gRim")

Getting started

README.md

Popular man pages

ciTest-array: Test for conditional independence in a contingency table
dmod: Log-linear model
ggmfit: Iterative proportional fitting of graphical Gaussian model
mmod: Mixed interaction model.
stepwise: Stepwise model selection in (graphical) interaction models
testdelete: Test deletion of edge from an interaction model
testEdges: Test edges in graphical models with p-value/AIC value
See all...

All man pages Function index File listing

Man pages

CGstats: Mean, covariance and counts for grouped data
ciTest-array: Test for conditional independence in a contingency table
ciTest_df: Test for conditional independence in a dataframe
ciTest-general: Generic function for conditional independence test
ciTest_mvn: Test for conditional independence in the multivariate normal...
ciTest_ordinal: A function to compute Monte Carlo and asymptotic tests of...
cmod: Graphical Gaussian model
dmod: Log-linear model
dModel-class: Class '"dModel"'
effloglin: Fitting Log-Linear Models by Message Passing
getEdges: Find edges in a graph and edges not in an undirected graph.
ggmfit: Iterative proportional fitting of graphical Gaussian model
ghk2phkParms: Conversion between different parametrizations of mixed...
gRim-internal: Internal functions in the gRim package
iModel-general: General functions related to iModels
loglinDim: Return the dimension of a log-linear model
mmod: Mixed interaction model.
modify_glist: Modify generating class for a graphical/hierarchical model
stepwise: Stepwise model selection in (graphical) interaction models
testadd: Test addition of edge to graphical model
testdelete: Test deletion of edge from an interaction model
testEdges: Test edges in graphical models with p-value/AIC value

Functions

CGstats Man page Source code
CGstats.data.frame Man page Source code
CGstats2initpms Source code
CGstats2mmodParms Man page Source code
CGstats_internal Man page Source code
CI.exact Source code
CI.ordinal Source code
CI_MC_prim Source code
CI_SMC_prim Source code
CI_X2_prim Source code
CItest.data.frame Man page
MIdatainfo Source code
MIparms2matrix Source code
add.edge_glist Source code
add.term Source code
add.term_glist Source code
addEdge_glist Man page Source code
addTerm_glist Man page Source code
amat Source code
amat_subtract Source code
as_amat Source code
backward Man page Source code
cModel Man page
cModel-class Man page
cModel_finalize Source code
check.glist Source code
ciTest Man page Source code
ciTest-array Man page
ciTest-general Man page
ciTest.data.frame Man page Source code
ciTest.list Man page Source code
ciTest.table Man page Source code
ciTest_df Man page Source code
ciTest_df_internal Source code
ciTest_mvn Man page Source code
ciTest_mvn_internal Source code
ciTest_ordinal Man page Source code
ciTest_table Man page Source code
cmod Man page Source code
coef.mModel Man page
coefficients.mModel Man page
colmult Source code
colstr Source code
compareGC Man page Source code
compareGCpairs Man page Source code
compareModel Source code
compareModels.iModel Man page Source code
comparemodels Source code
cov.wt Source code
dModel Man page
dModel-class Man page
dModel_finalize Source code
dModel_sparsity Source code
delete.term Source code
disc.levels Source code
dmod Man page Source code
doInput Source code
do_handlefix Source code
drop.edge_glist Source code
drop.term_glist Source code
dropEdge_glist Man page Source code
dropTerm_glist Man page Source code
edge_matrix Source code
effloglin Man page Source code
extendCGstats Source code
extract.power Source code
extractAIC.iModel Man page Source code
extractFIT Source code
fit.cModel Man page Source code
fit.dModel Man page Source code
fit.mModel Man page Source code
fit222 Source code
fit333 Source code
fitmModel Source code
fitmModel222 Source code
fitmModel333 Source code
fitted.dModel Man page Source code
formula.iModel Man page Source code
forward Man page Source code
genType Source code
getEdges Man page Source code
getEdges.graphNEL Man page Source code
getEdges.list Man page Source code
getEdges.matrix Man page Source code
getEdgesMAT Man page Source code
getInEdges Man page Source code
getInEdgesMAT Man page Source code
getOutEdges Man page Source code
getOutEdgesMAT Man page Source code
getWeakMarginalDataList Source code
getmi Man page Source code
ggmfit Man page Source code
ggmfitr Man page Source code
ghk2phkParms Man page Source code
ghk2pmsParms Man page Source code Source code
ghk2pmsParms_ Man page Source code
glist Source code
glist2amat Source code
glist2formula Source code
glistNUM Source code
hash_edge Source code
iModel-general Man page
iplot.iModel Man page Source code
iplot.mModel Man page
isDecomposable.dModel Man page Source code
isGraphical.dModel Man page Source code
list2pairs Source code
log.pd.det Source code
logLik.iModel Man page Source code
logLik.mModel Man page
logdet Source code
loglin Source code
loglinDecDim Man page Source code Source code
loglinDim Source code
loglinGenDim Man page Source code Source code
mModel Man page
mModel-class Man page
mModel_finalize Source code
mModel_iterate Source code
mModel_iterate222 Source code
mModel_iterate333 Source code
mModel_logLpms Source code
mModel_logLpms2 Source code
mModel_logLpms333 Source code
mModel_parmdiff Source code
mModel_parmdiff222 Source code
mModel_parmdiff333 Source code
mModelinfo Source code
mModelinfoPrimitive Source code
make.split.info Source code
makeHomogeneous Source code
makeParm Source code
mmod Man page Source code
mmod_dimension Man page Source code Source code
mmod_dimensionPrimitive Source code
modelProperties Man page Source code
modelProperties.dModel Man page Source code
modify_glist Man page Source code
modify_glistPrim Source code
moment2pmsParms Man page Source code
moments.by Source code
nfoPrint Source code
nfoPrint2 Source code
normalize.ghkParms Source code Source code
normalize_ghkParms_ Man page Source code
outerloop Source code
outerloop222 Source code
outerloop333 Source code
pFormula Man page
pFormula2 Source code
parminfo Source code
parminfo.CGstats Source code
parminfo.pms Source code
parse.change.list Source code
pd.det Source code
phk2ghkParms Man page Source code
phk2pmsParms Man page Source code
plot.iModel Man page Source code
plot.mModel Man page
pms2ghkParms Man page Source code Source code
pms2ghkParms_ Man page Source code
pms2phkParms Man page Source code
preprocess Source code
print.CGstats Man page Source code
print.MIfit Man page Source code
print.MIparms Man page Source code
print.citest Man page Source code
print.compareiModels Man page Source code
print.dModel Man page Source code
print.iModel Man page Source code
print.iModelsummary Man page Source code
print.mModel Man page
print.testadd Man page Source code
print.testdelete Man page Source code
reduceSet Source code
residuals.dModel Man page Source code
rhsf2char Source code
rowcol2idx Source code
s_gsd Source code
set.interactions Source code
split.data.by Source code
standard.innerloop Source code
standard.innerloop222 Source code
standard.innerloop333 Source code
stephalving.innerloop Source code
stephalving.innerloop222 Source code
stephalving.innerloop333 Source code
stepwise Man page
stepwise.iModel Man page Source code
summary.citest Man page Source code
summary.iModel Man page Source code
summary.mModel Man page Source code
terms.iModel Man page Source code
testEdges Man page Source code
testEdges.iModel Man page Source code
testInEdges Man page Source code
testInEdges_all Source code
testInEdges_headlong Source code
testOutEdges Man page Source code
testOutEdges_all Source code
testOutEdges_headlong Source code
testadd Man page Source code
testadd.iModel Man page Source code
testadd.mModel Man page
testdelete Man page Source code
testdelete.iModel Man page Source code
testdelete.mModel Man page
toString Source code Source code
triangulate.dModel Man page Source code
update.default Source code
update.ghkParms Source code
update.ghkParms222 Source code
update.ghkParms333 Source code
update.iModel Man page Source code
update.mModel Man page
updateA Man page Source code
update_edgeMAT Source code
update_ghkParms_ Man page Source code
vMMt Source code
weak.datamarg.cont Source code
weak.datamarg.disc Source code
weak.datamarg.mix Source code
weak.modelmarg.cont Source code
weak.modelmarg.disc Source code
weak.modelmarg.mix Source code
weakMarginalData Man page Source code Source code Source code
weakMarginalModel Man page Source code

Files

TODO
inst
inst/doc
inst/doc/gRim.pdf
inst/doc/gRim.R
inst/doc/gRim.Rnw
src
src/Makevars
src/_utils_print.h
src/ggmfit.c
src/_utils_mat.h
src/xxx2yyyParms.cpp
src/_utils_print.c
src/Makevars.win
src/_utils_mat.c
src/init.c
src/RcppExports.cpp
NAMESPACE
R
R/MI-xxx2yyyParms.R
R/ciTest_ordinal.R
R/iModel-plot.R
R/ciTest.R
R/MI-weakmodel.R
R/CGstats.R
R/getEdges.R
R/accessor.R
R/iModel-print.R
R/MI-dimension.R
R/ggmfit.R
R/iModel-dmod-dimension.R
R/iModel-labelEdges.R
R/iModel-testdelete.R
R/utilities.R
R/effloglin.R
R/iModel-dmod.R
R/ciTest-array.R
R/MI-fit3.R
R/MI-comparemodels.R
R/MI-fit2.R
R/RcppExports.R
R/GC-compare.R
R/iModel-testadd.R
R/iModel-update.R
R/pFormula2.R
R/MI-weakdata.R
R/MI-parminfo.R
R/iModel-cmod.R
R/iModel-compareModel.R
R/iModel-coerce.R
R/gRim-package.R
R/iModel-mmod.R
R/iModel-backwardforward.R
R/iModel-general.R
R/MI-fit.R
vignettes
vignettes/GMIR.sty
vignettes/gRim.Rnw
README.md
MD5
build
build/vignette.rds
DESCRIPTION
ChangeLog
man
man/testEdges.Rd
man/stepwise.Rd
man/ciTest-array.Rd
man/cmod.Rd
man/mmod.Rd
man/gRim-internal.Rd
man/dModel-class.Rd
man/dmod.Rd
man/ciTest_df.Rd
man/iModel-general.Rd
man/ciTest_mvn.Rd
man/testadd.Rd
man/ciTest-general.Rd
man/testdelete.Rd
man/modify_glist.Rd
man/ggmfit.Rd
man/effloglin.Rd
man/getEdges.Rd
man/CGstats.Rd
man/ghk2phkParms.Rd
man/loglinDim.Rd
man/ciTest_ordinal.Rd
gRim documentation built on May 19, 2017, 9:36 p.m.

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