Man pages for gclink
Gene-Cluster Discovery, Annotation and Visualization
| blastp_df | BLASTP Results for test Proteins |
| eggnog_df | EggNOG Functional Annotation Results |
| gc_add | Complete Gene Clusters by Adding Missing ORFs |
| gc_cal | Identify and Extract Gene Clusters from Scaled BLAST Data |
| gc_cluster | Identify Breakpoints of Gene Clusters within a Contig |
| gclink | Gene-Cluster Discovery, Annotation and Visualization |
| gc_plot | Plot Scaled Gene Clusters with Arrows |
| gc_position | Extract ORF Positions for One Specific Gene Cluster |
| gc_range | Determine ORF Range for a Candidate Gene Cluster |
| gc_scale | Scale Gene-Cluster Coordinates for Visualization |
| KO_group | KEGG Orthology (KO) Group Classification |
| length_filter | Remove Length Outliers from BLAST Results |
| orf_extract | Extract ORF and Genome Information from BLAST or BLASTP... |
| orf_locate | Parse ORF Coordinates from Prodigal FASTA Headers |
| PGC_group | Photosynthesis Gene Classification Groups |
| photosynthesis_gene_list | Photosynthesis Gene List |
| seq_data | Genomic Sequence Data with Annotations |
