blastp_df: BLASTP Results for test Proteins
In gclink: Gene-Cluster Discovery, Annotation and Visualization
blastp_df R Documentation
BLASTP Results for test Proteins
Description
A dataset containing BLASTP alignment results for proteins from test genomes of bacteria,
including alignment metrics.
Usage
blastp_df
Format
A data frame with multiple rows and 12 variables:
- qaccver
Character. Protein query identifier.
- saccver
Character. Subject protein identifier from reference databases.
- pident
Numeric. Percentage identity between query and subject sequences.
- length
Numeric. Length of the aligned sequence region.
- mismatch
Numeric. Number of mismatches in the alignment.
- gapopen
Numeric. Number of gap openings in the alignment.
- qstart
Numeric. Start position in query sequence.
- qend
Numeric. End position in query sequence.
- sstart
Numeric. Start position in subject sequence.
- send
Numeric. End position in subject sequence.
- evalue
Numeric. Expect value for the alignment.
- bitscore
Numeric. Bit score for the alignment.
gclink documentation built on Sept. 9, 2025, 5:39 p.m.
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| blastp_df | R Documentation |
BLASTP Results for test Proteins
Description
A dataset containing BLASTP alignment results for proteins from test genomes of bacteria, including alignment metrics.
Usage
blastp_df
Format
A data frame with multiple rows and 12 variables:
- qaccver
Character. Protein query identifier.
- saccver
Character. Subject protein identifier from reference databases.
- pident
Numeric. Percentage identity between query and subject sequences.
- length
Numeric. Length of the aligned sequence region.
- mismatch
Numeric. Number of mismatches in the alignment.
- gapopen
Numeric. Number of gap openings in the alignment.
- qstart
Numeric. Start position in query sequence.
- qend
Numeric. End position in query sequence.
- sstart
Numeric. Start position in subject sequence.
- send
Numeric. End position in subject sequence.
- evalue
Numeric. Expect value for the alignment.
- bitscore
Numeric. Bit score for the alignment.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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