eggnog_df: EggNOG Functional Annotation Results

In gclink: Gene-Cluster Discovery, Annotation and Visualization

EggNOG Functional Annotation Results

Description

A dataset containing EggNOG functional annotation results, including taxonomic classification, functional categories, and domain information.

Usage

eggnog_df

Format

A data frame with multiple rows and 21 variables:

#query

Character. Protein query identifier (e.g., "Houyiibacteriaceae–LLY-WYZ-15_3—k141_356661_13").

seed_ortholog

Character. Subject protein identifier from EggNOG database (e.g., "1168065.DOK_14784").

evalue

Numeric. Expect value for the annotation.

score

Numeric. Annotation bitscore.

eggNOG_OGs

Character.

max_annot_lvl

Character.

COG_category

Character.

Description

Character. Functional description (e.g., "Bacterial regulatory proteins, tetR family").

Preferred_name

Character. Gene name if available (e.g., "cobB").

GOs

Character.

EC

Character. Enzyme Commission number if applicable (e.g., "2.7.7.49").

KEGG_ko

Character. KEGG Orthology identifier if available (e.g., "ko:K00986").

KEGG_Pathway

Character.

KEGG_Module

Character.

KEGG_Reaction

Character.

KEGG_rclass

Character.

BRITE

Character.

KEGG_TC

Character.

CAZy

Character.

BiGG_Reaction

Character.

PFAMs

Character.

gclink documentation built on Sept. 9, 2025, 5:39 p.m.