Manage and analyze high-dimensional SNP data from chips with multiple densities.
|Author||Gamal Abdel-Azim [aut, cre]|
|Date of publication||2016-09-29 23:48:56|
|Maintainer||Gamal Abdel-Azim <firstname.lastname@example.org>|
|License||GPL (>= 2)|
arrayAppend: Append two arrays by adding new data to top array
BayesAB: Estimte SNP Effects by MCMC - Bayes (A and B) - beta
BayesCpi: Estimte SNP Effects by MCMC - Bayes C and Cpi - beta
GetHCS: Check SNP genotypes and exclude redundant SNPs
getMAF: Return frequency of the minor allele of a SNP
is.hwEq: Check a SNP for Hardy-Weinberg equilibrium
is.identical: Check two SNPs for near identity across genotyped samples
read.findhap: Read the output of Paul Vanraden's findhap,...
snpSelect: Select genotyped individuals and SNPs based on call rate,...
toArray: Turn Illumina's Genome Studio 'Final Report' file into an...
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