gems: Generalized Multistate Simulation Model

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Simulate and analyze multistate models with general hazard functions. gems provides functionality for the preparation of hazard functions and parameters, simulation from a general multistate model and predicting future events. The multistate model is not required to be a Markov model and may take the history of previous events into account. In the basic version, it allows to simulate from transition-specific hazard function, whose parameters are multivariable normally distributed.

Author
Luisa Salazar Vizcaya, Nello Blaser, Thomas Gsponer
Date of publication
2016-11-29 08:10:01
Maintainer
Luisa Salazar Vizcaya <luisa.salazar@ispm.unibe.ch>
License
GPL-2
Version
1.1.0

View on CRAN

Man pages

ArtCohort
Class '"ArtCohort"'
cumulativeIncidence
transition probabilities
gems
gems: Generalized Multistate Simulation Model
generateHazardMatrix
generate template for transition functions
generateParameterCovarianceMatrix
generate a template for parameter covariances
generateParameterMatrix
generate a template for mean parameters
PosteriorProbabilities
Class '"PosteriorProbabilities"'
simulateCohort
Simulate cohort
tavi
tavi data set
transitionProbabilities
transition probabilities
transition.structure
Class '"transition.structure"'

Files in this package

gems
gems/inst
gems/inst/CITATION
gems/inst/doc
gems/inst/doc/gems.pdf
gems/inst/doc/gems.Rnw
gems/NAMESPACE
gems/data
gems/data/tavi.rda
gems/R
gems/R/gems.r
gems/R/gems-package.R
gems/vignettes
gems/vignettes/sweave
gems/vignettes/sweave/PDF
gems/vignettes/sweave/PDF/Application-cincPlot.pdf
gems/vignettes/sweave/PDF/Application-postPlot.pdf
gems/vignettes/sweave/PDF/Application-InterPlot.pdf
gems/vignettes/sweave/PDF/Application-PWexpPlot.pdf
gems/vignettes/sweave/use.tex
gems/vignettes/sweave/case.Rnw
gems/vignettes/sweave/case.tex
gems/vignettes/sweave/use.Rnw
gems/vignettes/fig
gems/vignettes/fig/taviDAG.tex
gems/vignettes/fig/specDAG.tex
gems/vignettes/fig/caseDAG.tex
gems/vignettes/fig/dag4haz.tex
gems/vignettes/fig/dag4.tex
gems/vignettes/fig/flow.tex
gems/vignettes/lib
gems/vignettes/lib/myrefs.bib
gems/vignettes/script
gems/vignettes/script/conclusion.tex
gems/vignettes/script/introduction.tex
gems/vignettes/script/technical.tex
gems/vignettes/script/acknowledgments.tex
gems/vignettes/gems.Rnw
gems/MD5
gems/build
gems/build/vignette.rds
gems/DESCRIPTION
gems/ChangeLog
gems/man
gems/man/cumulativeIncidence.Rd
gems/man/PosteriorProbabilities.Rd
gems/man/gems.Rd
gems/man/transitionProbabilities.Rd
gems/man/generateParameterMatrix.Rd
gems/man/generateHazardMatrix.Rd
gems/man/transition.structure.Rd
gems/man/tavi.Rd
gems/man/generateParameterCovarianceMatrix.Rd
gems/man/ArtCohort.Rd
gems/man/simulateCohort.Rd