gems: Generalized Multistate Simulation Model

Simulate and analyze multistate models with general hazard functions. gems provides functionality for the preparation of hazard functions and parameters, simulation from a general multistate model and predicting future events. The multistate model is not required to be a Markov model and may take the history of previous events into account. In the basic version, it allows to simulate from transition-specific hazard function, whose parameters are multivariable normally distributed.

AuthorLuisa Salazar Vizcaya, Nello Blaser, Thomas Gsponer
Date of publication2016-11-29 08:10:01
MaintainerLuisa Salazar Vizcaya <luisa.salazar@ispm.unibe.ch>
LicenseGPL-2
Version1.1.0

View on CRAN

Functions

ArtCohort Man page
[.ArtCohort Man page
[,ArtCohort,ANY,ANY,ANY-method Man page
ArtCohort-class Man page
[,ArtCohort-method Man page
cumulativeIncidence Man page
gems Man page
gems-package Man page
generateHazardMatrix Man page
generateParameterCovarianceMatrix Man page
generateParameterMatrix Man page
head.ArtCohort Man page
head,ArtCohort-method Man page
head.PosteriorProbabilities Man page
head,PosteriorProbabilities-method Man page
plot.PosteriorProbabilities Man page
plot,PosteriorProbabilities-method Man page
possibleTransitions Man page
possibleTransitions,transition.structure-method Man page
PosteriorProbabilities Man page
[.PosteriorProbabilities Man page
[,PosteriorProbabilities,ANY,ANY,ANY-method Man page
PosteriorProbabilities-class Man page
[,PosteriorProbabilities-method Man page
print.transition.structure Man page
print,transition.structure-method Man page
simulateCohort Man page
summary.ArtCohort Man page
summary,ArtCohort-method Man page
tail.ArtCohort Man page
tail,ArtCohort-method Man page
tail.PosteriorProbabilities Man page
tail,PosteriorProbabilities-method Man page
tavi Man page
transitionProbabilities Man page
[[<-.transition.structure Man page
[[.transition.structure Man page
transition.structure Man page
transition.structure-class Man page
[[<-,transition.structure-method Man page
[[,transition.structure-method Man page
update.ArtCohort Man page
update,ArtCohort-method Man page

Files

gems
gems/inst
gems/inst/CITATION
gems/inst/doc
gems/inst/doc/gems.pdf
gems/inst/doc/gems.Rnw
gems/NAMESPACE
gems/data
gems/data/tavi.rda
gems/R
gems/R/gems.r
gems/R/gems-package.R
gems/vignettes
gems/vignettes/sweave
gems/vignettes/sweave/PDF
gems/vignettes/sweave/PDF/Application-cincPlot.pdf
gems/vignettes/sweave/PDF/Application-postPlot.pdf
gems/vignettes/sweave/PDF/Application-InterPlot.pdf
gems/vignettes/sweave/PDF/Application-PWexpPlot.pdf
gems/vignettes/sweave/use.tex
gems/vignettes/sweave/case.Rnw
gems/vignettes/sweave/case.tex
gems/vignettes/sweave/use.Rnw
gems/vignettes/fig
gems/vignettes/fig/taviDAG.tex
gems/vignettes/fig/specDAG.tex
gems/vignettes/fig/caseDAG.tex
gems/vignettes/fig/dag4haz.tex
gems/vignettes/fig/dag4.tex
gems/vignettes/fig/flow.tex
gems/vignettes/lib
gems/vignettes/lib/myrefs.bib
gems/vignettes/script
gems/vignettes/script/conclusion.tex
gems/vignettes/script/introduction.tex
gems/vignettes/script/technical.tex
gems/vignettes/script/acknowledgments.tex
gems/vignettes/gems.Rnw
gems/MD5
gems/build
gems/build/vignette.rds
gems/DESCRIPTION
gems/ChangeLog
gems/man
gems/man/cumulativeIncidence.Rd gems/man/PosteriorProbabilities.Rd gems/man/gems.Rd gems/man/transitionProbabilities.Rd gems/man/generateParameterMatrix.Rd gems/man/generateHazardMatrix.Rd gems/man/transition.structure.Rd gems/man/tavi.Rd gems/man/generateParameterCovarianceMatrix.Rd gems/man/ArtCohort.Rd gems/man/simulateCohort.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.