checkRates: Check Rates

In genSEIR: Predict Epidemic Curves with Generalized SEIR Modeling

Description

This function compares the fitted and calculated death and recovered ratios. The idea is to check whether the approximation of these ratios is appropriate.

Usage

checkRates(time, Q, R, D, kappaFun, lambdaFun, kappa, lambda, dt = 1)

Arguments

time	time vector
Q	time histories of the quarantined/active cases
R	time histories of the recovered cases
D	time histories of the deceased cases
kappaFun	anonymous function approximating the death rate
lambdaFun	anonymous function approximating the recovery rate
kappa	mortality rate
lambda	cure rate
dt	a time step, default is 1/24. This oversample time to ensure that the algorithm converges.

Value

plots for death rate and recovery rate

Author(s)

Selcuk Korkmaz, [e-mail]

References

Peng, L., Yang, W., Zhang, D., Zhuge, C., Hong, L. 2020. “Epidemic analysis of COVID-19 in China by dynamical modeling”, arXiv preprint arXiv:2002.06563.

https://www.mathworks.com/matlabcentral/fileexchange/74545-generalized-seir-epidemic-model-fitting-and-computation

See Also

SEIQRDP fit_SEIQRDP

genSEIR documentation built on July 12, 2021, 5:07 p.m.