geneExpressionFromGEO: Retrieves Gene Expression Dataset and Gene Symbols from GEO Code

A function that reads in the GEO code of a gene expression dataset, retrieves its data from GEO, (optional) retrieves the gene symbols of the dataset, and returns a simple dataframe table containing all the data. Platforms available: GPL11532, GPL23126, GPL6244, GPL80, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293, GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.

Package details

AuthorDavide Chicco [aut, cre] (<https://orcid.org/0000-0001-9655-7142>)
MaintainerDavide Chicco <davidechicco@davidechicco.it>
LicenseGPL-3
Version0.6
URL https://github.com/davidechicco/geneExpressionFromGEO
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("geneExpressionFromGEO")

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geneExpressionFromGEO documentation built on April 24, 2021, 5:08 p.m.