load.genesets: Load customized gene sets into work space
In geneListPie: Profiling a gene list into GOslim or KEGG function pie
Description
Usage
Arguments
Value
Author(s)
Description
Load customized gene sets into work space. Pre-packaged genesets can also be used
goslim.human.all
goslim.human.BP
goslim.human.CC
goslim.human.MF
goslim.mouse.all
goslim.mouse.BP
goslim.mouse.CC
goslim.mouse.MF
goslim.rat.all
goslim.rat.BP
goslim.rat.CC
goslim.rat.MF
goslim.yeast.all
goslim.yeast.BP
goslim.yeast.CC
goslim.yeast.MF
kegg2.5.generic
Usage
1
load.genesets(file = "geneset.gmt.txt")
Arguments
file
file name of customzied gene sets in MSigDB format. http://www.broadinstitute.org/gsea/msigdb/
Value
A character vector of length the number of lines read. Each line is a gene set.
Author(s)
Xutao Deng
geneListPie documentation built on May 2, 2019, 6:05 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
Description
Load customized gene sets into work space. Pre-packaged genesets can also be used
goslim.human.all
goslim.human.BP
goslim.human.CC
goslim.human.MF
goslim.mouse.all
goslim.mouse.BP
goslim.mouse.CC
goslim.mouse.MF
goslim.rat.all
goslim.rat.BP
goslim.rat.CC
goslim.rat.MF
goslim.yeast.all
goslim.yeast.BP
goslim.yeast.CC
goslim.yeast.MF
kegg2.5.generic
Usage
1 | load.genesets(file = "geneset.gmt.txt")
|
Arguments
file |
file name of customzied gene sets in MSigDB format. http://www.broadinstitute.org/gsea/msigdb/ |
Value
A character vector of length the number of lines read. Each line is a gene set.
Author(s)
Xutao Deng
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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