load.genesets: Load customized gene sets into work space

Description Usage Arguments Value Author(s)

View source: R/geneListPie.R

Description

Load customized gene sets into work space. Pre-packaged genesets can also be used
goslim.human.all
goslim.human.BP
goslim.human.CC
goslim.human.MF
goslim.mouse.all
goslim.mouse.BP
goslim.mouse.CC
goslim.mouse.MF
goslim.rat.all
goslim.rat.BP
goslim.rat.CC
goslim.rat.MF
goslim.yeast.all
goslim.yeast.BP
goslim.yeast.CC
goslim.yeast.MF
kegg2.5.generic

Usage

1
load.genesets(file = "geneset.gmt.txt")

Arguments

file

file name of customzied gene sets in MSigDB format. http://www.broadinstitute.org/gsea/msigdb/

Value

A character vector of length the number of lines read. Each line is a gene set.

Author(s)

Xutao Deng


geneListPie documentation built on May 29, 2017, 7:10 p.m.