printGeneListProfile: Print the profiling results

In geneListPie: Profiling a gene list into GOslim or KEGG function pie

Description

Print the results from geneListProfile(). The printing format can be MSigDB or 2 column (Gene_Set, number) format, where Gene_Set is the name of a gene set and number is the number of overlapping genes between the gene list and the gene set. In the MSigDB format the output contains all the overlapping gene symbols. The output can be stdin or directed to a file.

Usage

printGeneListProfile(r, file = "", format = NULL)

Arguments

r	profiling mapping results from geneListProfile
file	filename, default to stdin
format	"MSigDB" format or NULL

Author(s)

Xutao Deng

geneListPie documentation built on May 2, 2019, 6:05 a.m.