geneNetBP: Belief Propagation in Genotype-Phenotype Networks

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Belief propagation methods in genotype-phenotype networks (Conditional Gaussian and Discrete Bayesian Networks) to propagate phenotypic evidence through the network.

Author
Janhavi Moharil
Date of publication
2016-08-04 00:57:41
Maintainer
Janhavi Moharil <janhavim@buffalo.edu>
License
GPL-2
Version
2.0.1

View on CRAN

Man pages

absorb-methods
Absorb evidence and propagate beliefs in a genotype-phenotype...
fit-methods
Fit a Conditional Gaussian Bayesian Network or Discrete...
geneNetBP-package
Belief Propagation in Genotype-Phenotype Networks
gen.evidence
Generate a sequence of evidence for a continuous node in a...
hdl
Mus Musculus HDL QTL data from Leduc et. al. (2012)
mouse
Mus Musculus Kidney eQTL data from Hageman et. al. (2011)
plot-methods
Plot a Genotype-Phenotype Network
toy
Toy example dataset
yeast
Saccharomyces Cerevisiae eQTL data from Kruglak et. al....

Files in this package

geneNetBP
geneNetBP/inst
geneNetBP/inst/doc
geneNetBP/inst/doc/geneNetBPvignette.pdf
geneNetBP/inst/doc/geneNetBPvignette.Rnw
geneNetBP/inst/doc/geneNetBPvignette.R
geneNetBP/NAMESPACE
geneNetBP/data
geneNetBP/data/mouse.rda
geneNetBP/data/hdl.rda
geneNetBP/data/yeast.rda
geneNetBP/data/toy.rda
geneNetBP/R
geneNetBP/R/fit.gnbp.R
geneNetBP/R/fit.dbn.R
geneNetBP/R/plot-methods.R
geneNetBP/R/absorb.dbn.R
geneNetBP/R/gen.evidence.R
geneNetBP/R/absorb.gnbp.R
geneNetBP/vignettes
geneNetBP/vignettes/yeast_db_cox10_FC.eps
geneNetBP/vignettes/toy_graph.png
geneNetBP/vignettes/newbib02.bib
geneNetBP/vignettes/plos2009.bst
geneNetBP/vignettes/yeast_db_gpfit.eps
geneNetBP/vignettes/mouse_network_tlr12_colpalette.jpeg
geneNetBP/vignettes/mouse_cgbn_gpfit.eps
geneNetBP/vignettes/mouse_network_tlr12.png
geneNetBP/vignettes/geneNetBPvignette.Rnw
geneNetBP/vignettes/yeast_db_dbnfit.eps
geneNetBP/vignettes/toy_network_belief.png
geneNetBP/vignettes/yeast_db_cox10.eps
geneNetBP/vignettes/hdl_gnbp.eps
geneNetBP/vignettes/mouse_tlr12_evidence.png
geneNetBP/MD5
geneNetBP/build
geneNetBP/build/vignette.rds
geneNetBP/DESCRIPTION
geneNetBP/man
geneNetBP/man/plot-methods.Rd
geneNetBP/man/hdl.Rd
geneNetBP/man/gen.evidence.Rd
geneNetBP/man/toy.Rd
geneNetBP/man/mouse.Rd
geneNetBP/man/geneNetBP-package.Rd
geneNetBP/man/fit-methods.Rd
geneNetBP/man/yeast.Rd
geneNetBP/man/absorb-methods.Rd