Man pages for genekitr
Gene Analysis Toolkit
| as.enrichdat | Modify dataframe for enrichment plot |
| Datasets | Datasets geneList entrez gene list with decreasing fold... |
| expoSheet | Export list of data sets into different 'Excel' sheets |
| genGSEA | Gene Set Enrichment Analysis |
| genInfo | Get gene related information |
| genORA | Gene Over-Representation Enrichment Analysis |
| getGEO | Get GEO metadata |
| getPubmed | Get 'PubMed' paper records by searching abstract |
| importCP | Import 'clusterProfiler' result |
| importPanther | Import 'Panther' web result |
| importShinygo | Import 'shinyGO' web result |
| pipe | Pipe operator |
| plotEnrich | Plot for gene enrichment analysis of ORA method |
| plotEnrichAdv | Advanced Plot for gene enrichment analysis of ORA method |
| plotGSEA | Plot for gene enrichment analysis of GSEA method |
| plot_theme | Themes for all plots |
| plotVenn | Venn plot for groups of genes |
| plotVolcano | Volcano plot for differential expression analysis |
| simGO | Simplify GO enrichment result |
| transId | Transform id among symbol, entrezid, ensembl and uniprot. |
| transProbe | Transform probe id to symbol, entrezid, ensembl or uniprot. |
