getReactome: Get Reactome geneset and geneset_name Geneset is a data.frame...
In geneset: Get Gene Sets for Gene Enrichment Analysis
getReactome R Documentation
Get Reactome geneset and geneset_name
Geneset is a data.frame of 2 columns with term id and gene id;
Geneset_name is a data.frame of 2 columns with term id and term description
Description
Get Reactome geneset and geneset_name
Geneset is a data.frame of 2 columns with term id and gene id;
Geneset_name is a data.frame of 2 columns with term id and term description
Usage
getReactome(org = "human", download.method = NULL, data_dir = NULL)
Arguments
org
Organism name from 'reactome_org'.
download.method
"auto" (as default if NULL), "wininet" (for windows)
data_dir
data saving location, default is the package data directory
Value
A list including geneset and geneset name.
Examples
x = getReactome(org = "human", data_dir = tempdir())
geneset documentation built on Nov. 20, 2022, 9:07 a.m.
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| getReactome | R Documentation |
Get Reactome geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description
Description
Get Reactome geneset and geneset_name Geneset is a data.frame of 2 columns with term id and gene id; Geneset_name is a data.frame of 2 columns with term id and term description
Usage
getReactome(org = "human", download.method = NULL, data_dir = NULL)
Arguments
org |
Organism name from 'reactome_org'. |
download.method |
"auto" (as default if NULL), "wininet" (for windows) |
data_dir |
data saving location, default is the package data directory |
Value
A list including geneset and geneset name.
Examples
x = getReactome(org = "human", data_dir = tempdir())
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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