Man pages for genesysr
Genesys PGR Client
| api1_url | Get partial API v1 URL for the provided path |
| api2_url | Get partial API v2 URL for the provided path |
| authorization | Provide OAuth2 token to use for authorization with Genesys |
| check_country | Run Land-or-Sea check on MCPD data. Uploads only rows where... |
| check_landorsea | Run Land-or-Sea check on MCPD data using... |
| check_taxonomy | Check MCPD taxonomic data (GENUS, SPECIES, SPAUTHOR, SUBTAXA,... |
| client_login | Login to Genesys as a service client (system-to-system) |
| dot-check_auth | Ensure that environment has OAuth token |
| dot-fetch_accessions_page | Fetch accession passport data page. |
| dot-fetch_csv_page | Fetch a page of data from Genesys |
| dot-fetch_json_page | Fetch a page of data from Genesys |
| dot-list_accessions_page | List accession passport data (paginated) |
| dot-MAX_ALLOWED_PAGES | Max pages to retrieve |
| dot-onLoad | Configure package defaults on load |
| dot-post | HTTP POST method |
| download_mcpd | Download passport data for one genebank in Excel format and... |
| download_pdci | Download PDCI data for one genebank in Excel format and save... |
| fetch_accessions | Fetch accession passport data and return the paged data... |
| filter_DOI | Add filter on accession DOI |
| filter_GENUS | Add filter by genus |
| filter_INSTCODE | Add filter by genus |
| filter_ORIGCTY | Add filter on Country of origin of material |
| filter_SAMPSTAT | Add filter on Biological status of sample |
| filter_SPECIES | Add filter on specific epithet |
| get_accessions | Get accession passport data as a data table. |
| list_crops | Fetch Genesys crops. Note that the list of Genesys crops does... |
| list_institutes | List FAO WIEWS institutes. |
| list_species | Fetch taxonomic data of selected accessions. |
| mcpd_filter | Make or adjust filter using MCPD terminology |
| me | Who am i? Loads and prints the user profile from Genesys as... |
| print_setup | Print Genesys client configuration |
| setup | Configure the Genesys environment |
| setup_production | Setup for Genesys Production |
| setup_sandbox | Setup for Genesys Sandbox |
| user_login | Login to Genesys as a user |
