Man pages for genesysr
Genesys PGR Client

api1_urlGet full Genesys API v1 URL for a specific path
api2_urlGet full Genesys API v1 URL for a specific path
authorizationProvide OAuth2 token to use for authorization with Genesys
check_countryRun Land-or-Sea check on MCPD data. Uploads only rows where...
check_landorseaRun Land-or-Sea check on MCPD data using...
check_taxonomyCheck MCPD taxonomic data (GENUS, SPECIES, SPAUTHOR, SUBTAXA,...
client_loginLogin to Genesys as a service client (system-to-system)
dot-check_authEnsure that environment has OAuth token
dot-fetch_accessions_pageFetch accession passport data (paginated)
dot-list_accessions_pageList accession passport data (paginated)
dot-MAX_ALLOWED_PAGESMax pages to retrieve
dot-onLoadConfigure package defaults on load
dot-postHTTP POST method
download_mcpdDownload all passport data for one genebank in Excel format...
download_pdciDownload PDCI data for one genebank in Excel format and save...
fetch_accessionsFetch accession passport data
filter_DOIAdd filter on accession DOI
filter_GENUSAdd filter by genus
filter_ORIGCTYAdd filter on Country of origin of material
filter_SAMPSTATAdd filter on Biological status of sample
filter_SPECIESAdd filter on specific epithet
get_accessionsFetch accession passport data
mcpd_filterMake or adjust filter using MCPD terminology
meWho am i?
print_setupPrint Genesys client configuration
setupConfigure the Genesys environment
setup_productionSetup for Genesys Production
setup_sandboxSetup for Genesys Sandbox
user_loginLogin to Genesys as a user
genesysr documentation built on Dec. 1, 2019, 1:16 a.m.