get_accessions: Get accession passport data as a data table.

In genesysr: Genesys PGR Client

Get accession passport data as a data table.

Description

Get accession passport data as a data table.

Usage

get_accessions(
  filters = list(),
  page = 0,
  size = 1000,
  fields = NULL,
  exclude = NULL,
  selector = NULL,
  at.least = NULL
)

Arguments

filters	an R structure with Genesys filters
page	the page index (0-based)
size	number of records to load per page (page size)
fields	list of fields to fetch from Genesys
exclude	list of field prefixes to exclude from the Genesys response
selector	NULL or a function to "select" variables of interest
at.least	stop fetching when at.least records are received from Genesys

Value

Data table

See Also

mcpd_filter

Examples

## Not run: 
  # Retrieve all accession data by country of origin (Slovenia, Ivory Coast)
  accessions <- genesysr::get_accessions(list(countryOfOrigin = list(code3 = c('SVN', 'CIV'))))

  # Fetch Musa, but only geographic data and accessionNumber
  musa <- genesysr::get_accessions(list(taxonomy = list(genus = c('Musa'))),
    fields = c("accessionNumber", "geo"))

  # Apply selector function
  accessions <- genesysr::get_accessions(mcpd_filter(ORIGCTY = c('DEU', 'SVN')),
    selector = function(x) {
      list(id = x$id, acceNumb = x$accessionNumber, instCode = x$instituteCode)
    }, at.least = 100)

## End(Not run)

genesysr documentation built on Oct. 13, 2023, 9:07 a.m.