This package provides a variety of functions to analyze and model geostatistical count data with generalized linear spatial models, including 1) simulate and visualize the data; 2) posterior sampling with robust MCMC algorithms (in serial or parallel way); 3) perform prediction for unsampled locations; 4) conduct Bayesian model checking procedure to evaluate the goodness of fitting; 5) conduct transformed residual checking procedure. In the package, seamlessly embedded C++ programs and parallel computing techniques are implemented to speed up the computing processes.

Author | Liang Jing |

Date of publication | 2015-01-27 08:12:07 |

Maintainer | Liang Jing <ljing918@gmail.com> |

License | GPL (>= 2) |

Version | 1.150120 |

**baseline.dist:** Generate Distance Samples to Build Baseline Distribution

**BMCT:** Perform Bayesian Model Checking

**cdfU:** Approximate the CDF Value from Reference Samples

**cutChain:** Modify Markov Chains with Burn-in and Thining

**d.base:** Data Set of Baseline Samples

**e2dist:** Calculate Distances between Transformed Residuals and...

**Earthquakes:** Data Set of Earthquakes

**findMode:** Estimate Mode of the Posterior Samples

**helloWorld:** Hello

**loc2U:** Calculate the Distance Matrix among Given Locations

**loc2U_R:** Calculate the Distance Matrix among Given Locations

**locCircle:** Simulate Circlular Locations

**locGrid:** Simulate Locations on Grid

**locSquad:** Simulate Squared Locations

**locUloc:** Calculate the Distance Matrix Between Observed and Predicting...

**locUloc_R:** Calculate the Distance Matrix Between Observed and Predicting...

**MCMCinput:** Settings for the MCMC Algorithm

**mixChain:** Mix Parallel Markov Chains

**plotACF:** Auto-correlation Plot for Latent Variables

**plot_baseline:** Plot Baseline Samples

**plotData:** Plot Geostatistical Data

**plot_etran:** Plot Transformed Residuals

**plot_pRPS:** Plot Observed vs. Reference Diagnostic Statistics

**plotTexas:** Plot Texas Counties

**pOne:** Calculate One-side P-value

**predY:** Predict for Unsampled Locations

**pRPS:** Calculate P-value and RPS

**repYeb:** Generate Replicated Data with Estimated Parameters

**repYpost:** Generate Replicated Data with Posterior Samples of Latent...

**Rhizoc:** Rhizoc Data

**rhoMatern:** Matern Correlation Function

**rhoPowerExp:** Powered Exponential Correlation Function

**rhoSph:** Spherical Correlation Function

**Rongelap:** Data Set of Rongelap Island

**runMCMC:** Perform Robust MCMC Algorithms for GLSM

**runMCMC_:** Internal Function for Robust MCMC Algorithms

**runMCMCpartialPois_:** Internal Function for Robust MCMC Algorithms with Partial...

**runMCMC.sf:** Perform Robust MCMC Algorithms for GLSM in Parallel

**simData:** Simulate Data Set from Generalized Linear Spatial Model on...

**TexasCounty.boundary:** Data Set of Texas County Boundries

**TexasCounty.center:** Data Set of Texas County Centers

**TexasCounty.population:** Data Set of Texas County Population

**tranR:** Calculate Transformed Residuals for Observed Data

**U2Z:** Convert Distance Matrix to Correlation Matrix

**unifLoc:** Scale Locations into A Unit Square

**Weed:** Weed Data

baseline.dist | Man page |

BMCT | Man page |

cdfU | Man page |

cutChain | Man page |

d.base | Man page |

e2dist | Man page |

Earthquakes | Man page |

findMode | Man page |

helloWorld | Man page |

loc2U | Man page |

loc2U_R | Man page |

locCircle | Man page |

locGrid | Man page |

locSquad | Man page |

locUloc | Man page |

locUloc_R | Man page |

MCMCinput | Man page |

mixChain | Man page |

plotACF | Man page |

plot_baseline | Man page |

plotData | Man page |

plot_etran | Man page |

plot_pRPS | Man page |

plotTexas | Man page |

pOne | Man page |

predY | Man page |

pRPS | Man page |

repYeb | Man page |

repYpost | Man page |

Rhizoc | Man page |

rhoMatern | Man page |

rhoPowerExp | Man page |

rhoSph | Man page |

Rongelap | Man page |

runMCMC | Man page |

runMCMC_ | Man page |

runMCMCpartialPois_ | Man page |

runMCMC.sf | Man page |

simData | Man page |

TexasCounty.boundary | Man page |

TexasCounty.center | Man page |

TexasCounty.population | Man page |

tranR | Man page |

U2Z | Man page |

unifLoc | Man page |

Weed | Man page |

geoCount

geoCount/inst

geoCount/inst/CITATION

geoCount/inst/doc

geoCount/inst/doc/geoCount_HowtoUse.pdf

geoCount/inst/doc/geoCount_HowtoUse.R

geoCount/src

geoCount/src/runMCMCfunc.cpp

geoCount/src/Makevars

geoCount/src/helloWorld.cpp

geoCount/src/runMCMC.h

geoCount/src/runMCMCBP.cpp

geoCount/src/loc2U.cpp

geoCount/src/Makevars.win

geoCount/src/runMCMCpartialPois.cpp

geoCount/NAMESPACE

geoCount/data

geoCount/data/TexasCounty_center.RData

geoCount/data/Rhizoc.RData

geoCount/data/TexasCounty_boundary.RData

geoCount/data/Weed.RData

geoCount/data/datalist

geoCount/data/Earthquake.RData

geoCount/data/Rongelap.RData

geoCount/data/Dbase_n100N5000.RData

geoCount/data/TexasCounty_population.RData

geoCount/R

geoCount/R/postMCMC.R
geoCount/R/helloWorld.R
geoCount/R/locUZ.R
geoCount/R/simData.R
geoCount/R/checkingBMC.R
geoCount/R/checkingTRC.R
geoCount/R/plotData.R
geoCount/R/runMCMC.R
geoCount/MD5

geoCount/DESCRIPTION

geoCount/man

geoCount/man/predY.Rd
geoCount/man/findMode.Rd
geoCount/man/plot_pRPS.Rd
geoCount/man/plotACF.Rd
geoCount/man/unifLoc.Rd
geoCount/man/d.base.Rd
geoCount/man/pRPS.Rd
geoCount/man/runMCMCpartialPois_.Rd
geoCount/man/e2dist.Rd
geoCount/man/Weed.Rd
geoCount/man/TexasCounty.population.Rd
geoCount/man/U2Z.Rd
geoCount/man/runMCMC_.Rd
geoCount/man/MCMCinput.Rd
geoCount/man/tranR.Rd
geoCount/man/locSquad.Rd
geoCount/man/locUloc.Rd
geoCount/man/locGrid.Rd
geoCount/man/TexasCounty.boundary.Rd
geoCount/man/plot_etran.Rd
geoCount/man/TexasCounty.center.Rd
geoCount/man/Earthquakes.Rd
geoCount/man/helloWorld.Rd
geoCount/man/cutChain.Rd
geoCount/man/baseline.dist.Rd
geoCount/man/pOne.Rd
geoCount/man/runMCMC.Rd
geoCount/man/plot_baseline.Rd
geoCount/man/BMCT.Rd
geoCount/man/repYpost.Rd
geoCount/man/locCircle.Rd
geoCount/man/rhoMatern.Rd
geoCount/man/repYeb.Rd
geoCount/man/loc2U.Rd
geoCount/man/simData.Rd
geoCount/man/loc2U_R.Rd
geoCount/man/locUloc_R.Rd
geoCount/man/cdfU.Rd
geoCount/man/plotTexas.Rd
geoCount/man/mixChain.Rd
geoCount/man/Rhizoc.Rd
geoCount/man/runMCMC.sf.Rd
geoCount/man/plotData.Rd
geoCount/man/rhoPowerExp.Rd
geoCount/man/Rongelap.Rd
geoCount/man/rhoSph.Rd
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