arrayspecs | Convert landmark data matrix into array (p x k x n) |
bilat.symmetry | Analysis of bilateral symmetry |
buildtemplate | Build 3D surface template |
combine.subsets | Combine separate landmark configurations |
compare.CR | Comparisons of Effect Sizes from Modularity Analyses |
compare.evol.rates | Comparing net rates of shape evolution on phylogenies |
compare.multi.evol.rates | Comparing net rates of evolution among traits on phylogenies |
compare.physignal.z | Comparisons of Phylogenetic Signal Effect Sizes |
compare.pls | Comparisons of Effect Sizes from Partial Least Squares |
compare.ZVrel | Comparisons of Effect Sizes from Overall Integration Analyses |
coords.subset | Subset landmark coordinates via a factor |
define.links | Define links between landmarks |
define.modules | Define modules (landmark partitions) |
define.sliders | Select points to "slide" along curves |
digit.curves | Calculate semilandmarks along a curve |
digit.fixed | Digitize 3D landmarks on mesh3d object |
digitize2d | Digitize 2D landmarks on .jpg files |
digitsurface | Digitize 3D fixed landmarks and surface semilandmarks |
editTemplate | Edit 3D template |
estimate.missing | Estimate locations of missing landmarks |
findMeanSpec | Identify specimen closest to the mean of a set of Procrustes... |
fixed.angle | Rotate a subset of 2D landmarks to common articulation angle |
geomorph.data.frame | Create a data frame with shape data |
geomorph-package | Geometric morphometric analyses for 2D/3D data |
globalIntegration | Quantify global integration relative to self-similarity |
gm.measurement.error | This function is a wrapper for the function measurement.error... |
gm.prcomp | Principal and phylogenetically-aligned components analysis of... |
gpagen | Generalized Procrustes analysis of points, curves, and... |
gridPar | Set up parameters for grids, points, and links in... |
hummingbirds | Landmark data from hummingbird bills (includes sliding... |
integration.test | Quantify morphological integration between modules |
integration.Vrel | Quantify integration in a set of traits |
interlmkdist | Calculate linear distances between landmarks |
larvalMorph | Head and tail shapes of larval salamanders |
lizards | Dorsal head shape data of lizards |
make_ggplot | Convert geomorph plots to ggplot objects |
modularity.test | Evaluate the degree of modular signal in shape data |
morphol.disparity | Morphological disparity for one or more groups of specimens |
mosquito | Landmarks on mosquito wings |
mshape | Estimate mean shape for a set of aligned specimens |
na.omit.geomorph.data.frame | Handle missing values in rrpp.data.frame objects |
phylo.integration | Quantify phylogenetic morphological integration between two... |
phylo.modularity | Evaluate the degree of phylogenetic modular signal in... |
physignal | Assessing phylogenetic signal in Procrustes shape variables |
physignal.z | Assessing phylogenetic signal effect size in Procrustes shape... |
picknplot.shape | Pick points in geomorph scatterplots to visualize shape... |
plethodon | Landmark data from Plethodon salamander heads |
plethShapeFood | Head shape and food use data from Plethodon salamanders |
plethspecies | Head shape and phylogenetic relationships for several... |
plotAllometry | Plotting to assist visualization of shape-size covariation... |
plotAllSpecimens | Plot landmark coordinates for all specimens |
plot.bilat.symmetry | Plot Function for geomorph |
plot.CR | Plot Function for geomorph |
plot.CR.phylo | Plot Function for geomorph |
plot.evolrate | Plot Function for geomorph |
plot.gm.prcomp | Plot Function for geomorph |
plot.gpagen | Plot Function for geomorph |
plot.mshape | Plot Function for geomorph |
plotOutliers | Find potential outliers |
plot.physignal | Plot Function for geomorph |
plot.physignal.z | Plot Function for geomorph |
plot.pls | Plot Function for geomorph |
plot.procD.lm | Plot Function for geomorph |
plotRefToTarget | Plot shape differences between a reference and target... |
plotspec | Plot 3D specimen, fixed landmarks and surface semilandmarks |
print.bilat.symmetry | Print/Summary Function for geomorph |
print.combined.set | Print/Summary Function for geomorph |
print.compare.CR | Print/Summary Function for geomorph |
print.compare.physignal.z | Print/Summary Function for geomorph |
print.compare.pls | Print/Summary Function for geomorph |
print.compare.ZVrel | Print/Summary function for geomorph |
print.CR | Print/Summary Function for geomorph |
print.CR.phylo | Print/Summary Function for geomorph |
print.evolrate | Print/Summary Function for geomorph |
print.evolrate1 | Print/Summary Function for geomorph |
print.geomorphShapes | Print/Summary function for geomorph |
print.gm.prcomp | Print/Summary function for geomorph |
print.gpagen | Print/Summary Function for geomorph |
print.morphol.disparity | Print/Summary Function for geomorph |
print.physignal | Print/Summary Function for geomorph |
print.physignal.z | Print/Summary Function for geomorph |
print.pls | Print/Summary Function for geomorph |
print.procD.lm | Print/Summary Function for geomorph |
procD.lm | Procrustes ANOVA/regression for Procrustes shape variables |
procD.pgls | Phylogenetic ANOVA/regression for Procrustes shape variables |
pupfish | Landmarks on pupfish |
ratland | Landmark data from dataset rat |
readland.fcsv | Read landmark data matrix from fcsv file |
readland.nts | Read landmark data matrix from nts file |
readland.shapes | Read landmark data from a shapes object (StereoMorph) |
readland.tps | Read landmark data from tps file |
read.morphologika | Read landmark data from Morphologika file(s) |
readmulti.nts | Read and combine multiple nts files |
readmulti.tps | Read and combine multiple tps files |
read.ply | Read mesh data (vertices and faces) from ply files |
rotate.coords | Rotate or flip landmark or coordinate configurations |
scallopPLY | 3D scan of a scallop shell from a .ply file in mesh3d format |
scallops | Landmark data from scallop shells |
shapeHulls | Update Plots with Convex Hulls for Groups |
shape.predictor | Shape prediction from numeric predictors |
summary.bilat.symmetry | Print/Summary Function for geomorph |
summary.combined.set | Print/Summary Function for geomorph |
summary.compare.CR | Print/Summary Function for geomorph |
summary.compare.physignal.z | Print/Summary Function for geomorph |
summary.compare.pls | Print/Summary Function for geomorph |
summary.compare.ZVrel | Print/Summary Function for geomorph |
summary.CR | Print/Summary Function for geomorph |
summary.CR.phylo | Print/Summary Function for geomorph |
summary.evolrate | Print/Summary Function for geomorph |
summary.evolrate1 | Print/Summary Function for geomorph |
summary.geomorphShapes | Print/Summary Function for geomorph |
summary.gm.prcomp | Print/Summary Function for geomorph |
summary.gpagen | Print/Summary Function for geomorph |
summary.morphol.disparity | Print/Summary Function for geomorph |
summary.physignal | Print/Summary Function for geomorph |
summary.physignal.z | Print/Summary Function for geomorph |
summary.pls | Print/Summary Function for geomorph |
summary.procD.lm | Print/Summary Function for geomorph |
two.b.pls | Two-block partial least squares analysis for Procrustes shape... |
two.d.array | Convert (p x k x n) data array into 2D data matrix |
warpRefMesh | Creates a mesh3d object warped to the mean shape |
warpRefOutline | Creates a 2D outline warped to the mean shape |
writeland.tps | Write landmark data to tps file |
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