gridPar | R Documentation |
Function produces a list of parameter changes within plotRefToTarget
.
gridPar(
pt.bg = "gray",
pt.size = 1.5,
link.col = "gray",
link.lwd = 2,
link.lty = 1,
out.col = "gray",
out.cex = 0.1,
tar.pt.bg = "black",
tar.pt.size = 1,
tar.link.col = "black",
tar.link.lwd = 2,
tar.link.lty = 1,
tar.out.col = "black",
tar.out.cex = 0.1,
n.col.cell = 20,
grid.col = "black",
grid.lwd = 1,
grid.lty = 1,
txt.adj = NULL,
txt.pos = 2,
txt.cex = 0.8,
txt.col = "black"
)
pt.bg |
Background color of reference configuration points (single value or vector of values) |
pt.size |
Scale factor for reference configuration points (single value or vector of values) |
link.col |
The color of links for reference configurations (single value or vector of values) |
link.lwd |
The line weight of links for reference configurations (single value or vector of values) |
link.lty |
The line type of links for reference configurations (single value or vector of values) |
out.col |
The color of outline for reference configurations (single value or vector of values) |
out.cex |
The size of plotting symbol of outline for reference configurations (single value or vector of values) |
tar.pt.bg |
Background color of target configuration points (single value or vector of values) |
tar.pt.size |
Scale factor for target configuration points (single value or vector of values) |
tar.link.col |
The color of links for target configurations (single value or vector of values) |
tar.link.lwd |
The line weight of links for target configurations (single value or vector of values) |
tar.link.lty |
The line type of links for target configurations (single value or vector of values) |
tar.out.col |
The color of outline for target configurations (single value or vector of values) |
tar.out.cex |
The size of plotting symbol of outline for target configurations (single value or vector of values) |
n.col.cell |
The number of square cells (along x axis) for grids (single numerical value) |
grid.col |
The color of grid lines (single value) |
grid.lwd |
Scale factor for the weight of grid lines (single numerical value) |
grid.lty |
The line type for grid lines (single numerical value, as in base R |
txt.adj |
The adjustment value of the landmark label (one or two values, as in base R |
txt.pos |
The position of the landmark label, overrides txt.adj (single numerical value, as in base R |
txt.cex |
The size of the landmark label text (single numerical value, as in base R |
txt.col |
The color of the landmark label text (single numerical value, as in base R |
The function allows users to vary certain plotting parameters to produce different
graphical outcomes for plotRefToTarget
. Not all parameters need to be adjusted to use this function, as the defaults above will be used.
Michael Collyer & Emma Sherratt
plotRefToTarget
, text
, text3d
## Not run:
data(plethodon)
Y.gpa <- gpagen(plethodon$land) #GPA-alignment
ref <- mshape(Y.gpa$coords)
plotRefToTarget(ref, Y.gpa$coords[,,39]) # default settings
# Altering points and links
GP1 <- gridPar(pt.bg = "red", pt.size = 1, link.col = "blue", link.lwd = 2,
n.col.cell = 50)
plotRefToTarget(ref, Y.gpa$coords[,,39], gridPars = GP1, mag = 2,
links = plethodon$links, method = "TPS")
# Altering point color
GP2 <- gridPar(pt.bg = "green", pt.size = 1)
plotRefToTarget(ref, Y.gpa$coords[,,39], gridPars = GP2, mag = 3,
method = "vector")
# Altering ref and target points
GP3 <- gridPar(pt.bg = "blue", pt.size = 1.5, tar.pt.bg = "orange",
tar.pt.size = 1)
plotRefToTarget(ref, Y.gpa$coords[,,39], gridPars = GP3, mag = 3,
method = "points")
# Altering outline color
GP4 <- gridPar(tar.out.col = "red", tar.out.cex = 0.3)
plotRefToTarget(ref, Y.gpa$coords[,,39], gridPars = GP4, mag = 3,
outline = plethodon$outline, method = "TPS")
# Altering text labels
GP5 <- gridPar(txt.pos = 3, txt.col = "red")
plotRefToTarget(ref, Y.gpa$coords[,,39], gridPars = GP5, mag = 3,
method = "vector", label = TRUE)
## End(Not run)
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