set_assess_time: Adjusts assessment time for simulations

In gestate: Generalised Survival Trial Assessment Tool Environment

Adjusts assessment time for simulations

Description

Function for modifying the assessment time of simulate_trials() or simulate_trials_strata() simulations.
It is set up to automatically read in either matrix or list formats from simulate_trials() or simulate_trials_strata(), and only these inputs are supported.
Note that if recruitment had not finished in the input then any increases in assessment time cannot account for the missing patients. It is therefore strongly recommended to initially simulate for at least the duration of the recruitment before reducing the number to missing patients.
This function can also be used to change format and/or slim down data for time-driven simulations.

Usage

set_assess_time(
  data,
  time,
  output_type = c("input", "matrix", "list"),
  detailed_output = TRUE,
  Time = "Time",
  Event = "Censored",
  censoringOne = TRUE,
  Iter = "Iter"
)

Arguments

data	Output file from simulate_trials() or simulate_trials_strata() created with detailed_output=TRUE, in either "list" or "matrix" format. Only these formats are supported.
time	Positive number specifying the required assessment time.
output_type	Choice of "input" (output in same format as input),"matrix" (matrix format output) or "list" (list format output). Default="input".
detailed_output	Boolean to require full details of timings of competing processes. If FALSE, the simplified data only includes the *'ed output columns - this approximately halves RAM requirements. Default=TRUE (detailed).
Time	String specifying the name of the time column. Default="Time"
Event	String specifying the name of the censoring/event column. Default="Censored" (and by default it is a censoring column unless censoringOne=FALSE)
censoringOne	Boolean specifying whether censoring is denoted in the censoring/event column by a one (TRUE) or zero (FALSE). Default=TRUE (censorings denoted by 1, events by 0)
Iter	String specifying the name of the iterations column. Default="Iter"

Value

Returns the input simulated trial, in either matrix or list format, with modified assessment times. All columns dependent on this are also updated.

Author(s)

James Bell

Examples

example_sim <- simulate_trials(active_ecurve=Weibull(250,0.8),control_ecurve=Weibull(100,1),
rcurve=LinearR(12,100,100), assess=20, iterations=5,seed=12345,detailed_output=TRUE)

adjusted_example <- set_assess_time(data=example_sim,time=10)

gestate documentation built on April 26, 2023, 5:10 p.m.