upset-plot: Plot a upset plot

In ggVennDiagram: A 'ggplot2' Implement of Venn Diagram

Plot a upset plot

Description

This function generate a upset plot by creating a composite plot which contains subplots generated by ggplot2.

Usage

plot_upset(
  venn,
  nintersects = NULL,
  order.intersect.by = c("size", "name", "none"),
  order.set.by = c("size", "name", "none"),
  relative_height = 3,
  relative_width = 0.3,
  top.bar.color = "grey30",
  top.bar.y.label = NULL,
  top.bar.show.numbers = TRUE,
  top.bar.numbers.size = 3,
  sets.bar.color = "grey30",
  sets.bar.show.numbers = FALSE,
  sets.bar.x.label = "Set Size",
  intersection.matrix.color = "grey30",
  specific = TRUE,
  ...
)

Arguments

venn	a class Venn object
nintersects	number of intersects. If NULL, all intersections will show.
order.intersect.by	'size', 'name', or "none"
order.set.by	'size', 'name', or "none"
relative_height	the relative height of top panel in upset plot
relative_width	the relative width of left panel in upset plot
top.bar.color	default is "grey30"
top.bar.y.label	default is NULL
top.bar.show.numbers	default is TRUE
top.bar.numbers.size	text size of numbers
sets.bar.color	default is "grey30"
sets.bar.show.numbers	default is FALSE
sets.bar.x.label	default is "Set Size"
intersection.matrix.color	default is "grey30"
specific	whether only include specific items in subsets, default is TRUE.
...	useless

Value

an upset plot

Examples

 list = list(A = sample(LETTERS, 20),
             B = sample(LETTERS, 22),
             C = sample(LETTERS, 14),
             D = sample(LETTERS, 30, replace = TRUE))
 venn = Venn(list)
 plot_upset(venn)
 plot_upset(venn, order.intersect.by = "name")
 plot_upset(venn, nintersects = 6)

ggVennDiagram documentation built on May 29, 2024, 10:21 a.m.