Man pages for ggalign
A 'ggplot2' Extension for Composable Visualization
| active | Plot Adding Context Settings |
| align | Create a New 'CraftBox' Object with 'CraftAlign' craftsman |
| align_dendro | Plot dendrogram tree |
| align_group | Group and align observations based on a group vector |
| align_hclust | Reorder or Group observations based on hierarchical... |
| align_kmeans | Split observations by k-means clustering groups. |
| align_order | Order observations based on weights |
| align_order2 | Reorders layout observations based on specific statistics. |
| align_panel | Create ggplot object with layout panel data |
| alignpatches | Arrange multiple plots into a grid |
| align_phylo | Plot Phylogenetics tree |
| area | Define the plotting areas |
| as_grob | Convert Object into a Grob |
| as_grob.formula | Convert Object into a Grob |
| as_grob.ggalign-colon-colon-alignpatches | Convert Object into a Grob |
| as_grob.ggplot | Convert Object into a Grob |
| as_grob.gList | Convert Object into a Grob |
| as_grob.grob | Convert Object into a Grob |
| as_grob.Heatmap | Convert Object into a Grob |
| as_grob.patch | Convert Object into a Grob |
| as_grob.patch_ggplot | Convert Object into a Grob |
| as_grob.patchwork | Convert Object into a Grob |
| as_grob.pheatmap | Convert Object into a Grob |
| as_grob.recordedplot | Convert Object into a Grob |
| as_grob.trellis | Convert Object into a Grob |
| circle_genomic | Create a Circular Layout for Genomic Data |
| circle_layout | Arrange plots in a circular layout |
| circle_switch | Determine the active context of circle layout |
| continuous_limits | Set continuous limits for the layout |
| coord_circle | Polar Coordinates with Enhanced Controls |
| Craftsman | Craftsman Object for Layout Management |
| cross_link | Add a plot to connect selected observations |
| cross_mark | Add a plot to annotate observations |
| cross_none | Reset layout ordering and panel group |
| dot-link_draw | Define the links to connect a pair of observations |
| dot-mark_draw | Define the links to connect the marked observations |
| draw_key_gshape | Key glyphs for legends |
| element_vec | Apply a function to the fields of an element object |
| facet_sector | Polar coordinates with Facet support |
| fortify_data_frame | Build a data frame |
| fortify_data_frame.character | Build a data frame |
| fortify_data_frame.default | Build a data frame |
| fortify_data_frame.dendrogram | Build a data frame |
| fortify_data_frame.GRanges | Build a data frame |
| fortify_data_frame.matrix | Build a data frame |
| fortify_data_frame.phylo | Build a data frame |
| fortify_matrix | Build a Matrix |
| fortify_matrix.default | Build a Matrix |
| fortify_matrix.GISTIC | Build a matrix from a maftools object |
| fortify_matrix.list_upset | Build a Matrix for UpSet plot |
| fortify_matrix.MAF | Build a Matrix for OncoPrint |
| fortify_matrix.matrix | Build a matrix |
| fortify_matrix.matrix_oncoplot | Build a Matrix for OncoPrint |
| fortify_matrix.matrix_upset | Build a Matrix for UpSet plot |
| free | Free from alignment |
| genomic_density | Calculate Genomic Region Density |
| genomic_dist | Calculate inter-region distances for genomic rainfall plots |
| geom_draw | Layer with Grid or Function |
| geom_gshape | Layer with a customized shape graphic using grid functions. |
| geom_magick | Draw images as point shapes using magick |
| geom_pie | Pie charts |
| geom_rect3d | Add z-aesthetic for geom_tile |
| geom_subrect | Subdivide Rectangles |
| ggalign | Add ggplot by Aligning discrete or continuous variable |
| ggalign_attr | Get Data from the Attribute Attached by ggalign |
| ggalign_data_set | Attach supplementary data and levels for ggalign |
| ggalignGrob | Generate a plot grob. |
| ggalign-package | ggalign: A 'ggplot2' Extension for Composable Visualization |
| ggalign_stat | Get the statistics from the layout |
| ggcross | Connect two layout crosswise |
| ggfree | Add ggplot to layout without alignment |
| ggmark | Add a plot to annotate selected observations |
| ggoncoplot | Create an OncoPrint |
| ggupset | Create an UpSet plot |
| ggwrap | Wrap Arbitrary Graphics to ggplot |
| hclust2 | Generate Tree Structures with Hierarchical Clustering |
| heatmap_layout | Create a heatmap |
| inset | Create a ggplot inset |
| is_layout | Reports whether 'x' is layout object |
| layer_order | Change the layer adding order |
| layout_annotation | Add layout annotation |
| layout_design | Define the grid to compose plots in |
| layout_expand | Set Expansion for the Layout |
| layout-operator | Layout operator |
| LayoutProto | A 'Layout' object |
| Layout-subset | Subset a 'Layout' object |
| layout_tags | Control Plot Tagging in Layouts |
| layout_theme | Modify theme of the layout |
| layout_title | Annotate the whole layout |
| link_draw | Define the links to connect a pair of observations |
| link_line | Link the paired observations with a line |
| link_tetragon | Link the paired observations with a quadrilateral |
| magickGrob | Rasterize a grob object with magick |
| mark_draw | Define the links to connect the marked observations |
| mark_line | Link the observations and the panel with a line |
| mark_tetragon | Link the observations and the panel with a quadrilateral |
| mark_triangle | Link the observations and the panel with a triangle |
| memo_order | Sort matrix for better visualization |
| new_tune | Change the shape of the input object |
| no_expansion | Remove scale expansion |
| order2 | Ordering Permutation |
| pair_links | Helper function to create pairs of observation groups |
| patch | Get Patch representation |
| patch_title | Add patch titles to plot borders |
| plot_add_scheme | Apply a Scheme to a plot |
| plot_ideogram | Add an aligned cytoband ideogram plot |
| quad_active | Determine the Active Context of Quad-Layout |
| quad_init | Initialize Quad-Layout Annotation |
| quad_layout | Arrange plots in the quad-side of a main plot |
| quad_scope | Modify operated Context in 'quad_layout()' |
| quad_switch | Determine the Active Context of Quad-Layout |
| raster_magick | Rasterize the ggplot layers |
| read_example | Read Example Data |
| reexports | Objects exported from other packages |
| scale_gshape_manual | Scale for 'gshape' aesthetic |
| scale_z_continuous | z scales |
| Scheme | Abstract Scheme Class |
| scheme_align | Align Specifications in the Layout |
| scheme_data | Plot data Specifications |
| scheme_inherit | Inherit a scheme from a parent |
| scheme_init | Initialize a scheme object |
| Schemes | A container for multiple layout schemes |
| scheme_theme | Plot default theme |
| scheme_update | Update the scheme |
| stack_cross | Arrange plots crosswise horizontally or vertically |
| stack_genomic | Create a stack Layout for Genomic Data |
| stack_layout | Arrange plots horizontally or vertically |
| stack_switch | Determine the active context of stack layout |
| standardized_gtable | Standardized gtable Representation |
| theme_no_axes | Remove axis elements |
| tune | Change the shape of the input object |
| tune.list | Convert the shape of a list for fortify method |
| tune.MAF | Convert the shape of a MAF for fortify method |
| tune.matrix | Convert the shape of a matrix for fortify method |
| with_quad | Create ggplot object with layout panel data |
