fortify_matrix.phylo: Build a matrix from 'phylo' object

In ggalign: A 'ggplot2' Extension for Consistent Axis Alignment

Build a matrix from phylo object

Description

This method allows a phylo object to be directly input into stack_discrete() or circle_discrete(). This makes it possible to add align_phylo() to the stack independently, as align_phylo() requires the layout to have labels.

Usage

## S3 method for class 'phylo'
fortify_matrix(data, ..., data_arg = caller_arg(data), call = NULL)

Arguments

data	A phylo object.
...	These dots are for future extensions and must be empty.
data_arg	The argument name for data. Developers can use it to improve messages. Not used by the user.
call	The execution environment where data and other arguments for the method are collected. Developers can use it to improve messages. Not used by the user.

Value

A one-column matrix where the tip labels are the values, and the row names will also be the tip labels.

See Also

Other fortify_matrix() methods: fortify_matrix.GISTIC(), fortify_matrix.MAF(), fortify_matrix.default(), fortify_matrix.list_upset(), fortify_matrix.matrix(), fortify_matrix.matrix_oncoplot(), fortify_matrix.matrix_upset()

ggalign documentation built on June 8, 2025, 11:25 a.m.