print: Print and format ggeffects-objects

In ggeffects: Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Outputs

Print and format ggeffects-objects

Description

A generic print-method for ggeffects-objects.

Usage

## S3 method for class 'ggeffects'
format(
  x,
  variable_labels = FALSE,
  value_labels = FALSE,
  group_name = FALSE,
  row_header_separator = ", ",
  digits = 2,
  collapse_ci = FALSE,
  collapse_tables = FALSE,
  n,
  ...
)

## S3 method for class 'ggcomparisons'
format(x, collapse_ci = FALSE, collapse_p = FALSE, combine_levels = FALSE, ...)

## S3 method for class 'ggeffects'
print(x, group_name = TRUE, digits = 2, verbose = TRUE, ...)

## S3 method for class 'ggeffects'
print_md(x, group_name = TRUE, digits = 2, ...)

## S3 method for class 'ggeffects'
print_html(
  x,
  group_name = TRUE,
  digits = 2,
  theme = NULL,
  engine = c("tt", "gt"),
  ...
)

## S3 method for class 'ggcomparisons'
print(x, collapse_tables = FALSE, ...)

## S3 method for class 'ggcomparisons'
print_html(
  x,
  collapse_ci = FALSE,
  collapse_p = FALSE,
  theme = NULL,
  engine = c("tt", "gt"),
  ...
)

## S3 method for class 'ggcomparisons'
print_md(x, collapse_ci = FALSE, collapse_p = FALSE, theme = NULL, ...)

Arguments

x	An object of class ggeffects, as returned by the functions from this package.
variable_labels	Logical, if TRUE variable labels are used as column headers. If FALSE, variable names are used.
value_labels	Logical, if TRUE, value labels are used as values in the table output. If FALSE, the numeric values or factor levels are used.
group_name	Logical, if TRUE, the name of further focal terms are used in the sub-headings of the table. If FALSE, only the values of the focal terms are used.
row_header_separator	Character, separator between the different subgroups in the table output.
digits	Number of digits to print.
collapse_ci	Logical, if TRUE, the columns with predicted values and confidence intervals are collapsed into one column, e.g. ⁠Predicted (95% CI)⁠.
collapse_tables	Logical, if TRUE, all tables are combined into one. The tables are not split by further focal terms, but rather are added as columns. Only works when there is more than one focal term.
n	Number of rows to print per subgroup. If NULL, a default number of rows is printed, depending on the number of subgroups.
...	Further arguments passed down to format.ggeffects(), some of them are also passed down further to insight::format_table() or insight::format_value().
collapse_p	Logical, if TRUE, the columns with predicted values and p-values are collapsed into one column, where significant p-values are indicated as asterisks.
combine_levels	Logical, if TRUE, the levels of the first comparison of each focal term against the second are combined into one column. This is useful when comparing multiple focal terms, e.g. education = low-high and gender = male-female are combined into first = low-male and second = high-female.
verbose	Toggle messages.
theme	The theme to apply to the table. One of "grid", "striped", "bootstrap", or "darklines".
engine	The engine to use for printing. One of "tt" (default) or "gt". "tt" uses the tinytable package, "gt" uses the gt package.

Value

format() return a formatted data frame, print() prints a formatted data frame printed to the console. print_html() returns a tinytable object by default (unless changed with engine = "gt"), which is printed as HTML, markdown or LaTeX table (depending on the context from which print_html() is called, see tinytable::tt() for details).

Global Options to Customize Tables when Printing

The verbose argument can be used to display or silence messages and warnings. Furthermore, options() can be used to set defaults for the print() and print_html() method. The following options are available, which can simply be run in the console:

• ggeffects_ci_brackets: Define a character vector of length two, indicating the opening and closing parentheses that encompass the confidence intervals values, e.g. options(ggeffects_ci_brackets = c("[", "]")).

• ggeffects_collapse_ci: Logical, if TRUE, the columns with predicted values (or contrasts) and confidence intervals are collapsed into one column, e.g. options(ggeffects_collapse_ci = TRUE).

• ggeffects_collapse_p: Logical, if TRUE, the columns with predicted values (or contrasts) and p-values are collapsed into one column, e.g. options(ggeffects_collapse_p = TRUE). Note that p-values are replaced by asterisk-symbols (stars) or empty strings when ggeffects_collapse_p = TRUE, depending on the significance level.

• ggeffects_collapse_tables: Logical, if TRUE, multiple tables for subgroups are combined into one table. Only works when there is more than one focal term, e.g. options(ggeffects_collapse_tables = TRUE).

• ggeffects_output_format: String, either "text", "markdown" or "html". Defines the default output format from predict_response(). If "html", a formatted HTML table is created and printed to the view pane. "markdown" creates a markdown-formatted table inside Rmarkdown documents, and prints a text-format table to the console when used interactively. If "text" or NULL, a formatted table is printed to the console, e.g. options(ggeffects_output_format = "html").

• ggeffects_html_engine: String, either "tt" or "gt". Defines the default engine to use for printing HTML tables. If "tt", the tinytable package is used, if "gt", the gt package is used, e.g. options(ggeffects_html_engine = "gt").

Use ⁠options(<option_name> = NULL)⁠ to remove the option.

Examples

data(efc, package = "ggeffects")
fit <- lm(barthtot ~ c12hour + e42dep, data = efc)

# default print
predict_response(fit, "e42dep")

# surround CI values with parentheses
print(predict_response(fit, "e42dep"), ci_brackets = c("(", ")"))
# you can also use `options(ggeffects_ci_brackets = c("[", "]"))`
# to set this globally

# collapse CI columns into column with predicted values
print(predict_response(fit, "e42dep"), collapse_ci = TRUE)

# include value labels
print(predict_response(fit, "e42dep"), value_labels = TRUE)

# include variable labels in column headers
print(predict_response(fit, "e42dep"), variable_labels = TRUE)

# include value labels and variable labels
print(predict_response(fit, "e42dep"), variable_labels = TRUE, value_labels = TRUE)

data(iris)
m <- lm(Sepal.Length ~ Species * Petal.Length, data = iris)

# default print with subgroups
predict_response(m, c("Petal.Length", "Species"))

# omit name of grouping variable in subgroup table headers
print(predict_response(m, c("Petal.Length", "Species")), group_name = FALSE)

# collapse tables into one
print(predict_response(m, c("Petal.Length", "Species")), collapse_tables = TRUE, n = 3)

# increase number of digits
print(predict_response(fit, "e42dep"), digits = 5)

ggeffects documentation built on Sept. 12, 2024, 7:41 a.m.