Variable Selection in Linear Mixed Models for SNP Data

admixed | Simulated Dataset with 1D Geography |

gen_structured_model | Simulation Scenario from Bhatnagar et al. (2018+) ggmix paper |

ggmix | Fit Linear Mixed Model with Lasso or Group Lasso... |

ggmix_data_object | Constructor functions for the different ggmix objects |

gic | Generalised Information Criterion |

gr_eta_lasso_fullrank | Functions related to eta parameter used in optim and kkt... |

karim | Karim's Simulated Data |

kkt_check | Check of KKT Conditions for Linear Mixed Model |

lambdalasso | Estimation of Lambda Sequence for Linear Mixed Model with... |

lmmlasso | Estimation of Linear Mixed Model with Lasso Penalty |

logliklasso | Estimation of Log-likelihood for Linear Mixed Model with... |

plot.ggmix_fit | Plot Method for 'ggmix_fit' object |

plot.ggmix_gic | Plot the Generalised Information Criteria curve produced by... |

predict.ggmix_fit | Make predictions from a 'ggmix_fit' object |

predict.ggmix_gic | Make predictions from a 'ggmix_gic' object |

print.ggmix_fit | Print Method for Objects of Class 'ggmix_fit' |

ranef | Extract Random Effects |

sigma2lasso | Estimation of Sigma2 for Linear Mixed Model with Lasso... |

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