A simulated dataset with a kinship matrix
A list with 6 elements:
vector of length 1000 representing the true regression coefficients. 10 non-zero coefficients, the rest are 0.
the true kinship matrix
polygenic variance, set to be 1.26
error variance, set to be 1
the total trait heritability. Set to be 60 of genotypes of dimension 600 x 1000 SNPs, with approximately 800 common and 200 rare SNPs
If you simulate data using the scenario provided in the example, then the QTL heritability of y will be 8 of the trait’s total heritability), and the trait total heritability is set to be 60
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