branch_singles: Add branches of length zero to get rid of single nodes in an...
In ggmuller: Create Muller Plots of Evolutionary Dynamics
View source: R/SupplementaryFunctions.R
branch_singles R Documentation
Add branches of length zero to get rid of single nodes in an adjacency matrix
Description
Single nodes are those with exactly one daughter.
This function is required by adj_matrix_to_tree,
since valid "phylo" objects cannot contain single nodes.
If pre-existing branches lack lengths then these are set to 1.
Usage
branch_singles(edges)
Arguments
edges
Dataframe comprising an adjacency matrix, with column names "Parent" and "Identity"
Value
A dataframe comprising the augmented adjacency matrix.
Author(s)
Rob Noble, robjohnnoble@gmail.com
Examples
edges1 <- data.frame(Parent = c(1,1,1,3), Identity = 2:5)
branch_singles(edges1)
ggmuller documentation built on Feb. 16, 2023, 7:42 p.m.
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View source: R/SupplementaryFunctions.R
| branch_singles | R Documentation |
Add branches of length zero to get rid of single nodes in an adjacency matrix
Description
Single nodes are those with exactly one daughter. This function is required by adj_matrix_to_tree, since valid "phylo" objects cannot contain single nodes. If pre-existing branches lack lengths then these are set to 1.
Usage
branch_singles(edges)
Arguments
edges |
Dataframe comprising an adjacency matrix, with column names "Parent" and "Identity" |
Value
A dataframe comprising the augmented adjacency matrix.
Author(s)
Rob Noble, robjohnnoble@gmail.com
Examples
edges1 <- data.frame(Parent = c(1,1,1,3), Identity = 2:5) branch_singles(edges1)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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