R/kegg_abundance.R

In ggpicrust2: Make 'PICRUSt2' Output Analysis and Visualization Easier

#' KEGG Abundance Dataset
#'
#' A dataset derived from 'ko_abundance' by the function 'ko2kegg_abundance' in the ggpicrust2 package.
#' Each row corresponds to a KEGG pathway, and each column corresponds to a sample.
#'
#' @format A data frame where rownames are KEGG pathways and column names are individual sample names, including:
#' "SRR11393730", "SRR11393731", "SRR11393732", "SRR11393733", "SRR11393734", "SRR11393735", "SRR11393736",
#' "SRR11393737", "SRR11393738", "SRR11393739", "SRR11393740", "SRR11393741", "SRR11393742", "SRR11393743",
#' "SRR11393744", "SRR11393745", "SRR11393746", "SRR11393747", "SRR11393748", "SRR11393749", "SRR11393750",
#' "SRR11393751", "SRR11393752", "SRR11393753", "SRR11393754", "SRR11393755", "SRR11393756", "SRR11393757",
#' "SRR11393758", "SRR11393759", "SRR11393760", "SRR11393761", "SRR11393762", "SRR11393763", "SRR11393764",
#' "SRR11393765", "SRR11393766", "SRR11393767", "SRR11393768", "SRR11393769", "SRR11393770", "SRR11393771",
#' "SRR11393772", "SRR11393773", "SRR11393774", "SRR11393775", "SRR11393776", "SRR11393777", "SRR11393778", "SRR11393779"
#'
#' @source From ggpicrust2 package demonstration.
#' @references Douglas GM, Maffei VJ, Zaneveld J, Yurgel SN, Brown JR, Taylor CM, Huttenhower C, Langille MGI. PICRUSt2 for prediction of metagenome functions. Nat Biotechnol. 2020.
"kegg_abundance"