ko_abundance: KO Abundance Dataset
In ggpicrust2: Make 'PICRUSt2' Output Analysis and Visualization Easier
ko_abundance R Documentation
KO Abundance Dataset
Description
This is a demonstration dataset from the ggpicrust2 package, representing the output of PICRUSt2.
Each row represents a KO (KEGG Orthology) group, and each column corresponds to a sample.
Usage
ko_abundance
Format
A data frame where rownames are KO groups and column names include #NAME and individual sample names, such as:
"#NAME", "SRR11393730", "SRR11393731", "SRR11393732", "SRR11393733", "SRR11393734", "SRR11393735", "SRR11393736",
"SRR11393737", "SRR11393738", "SRR11393739", "SRR11393740", "SRR11393741", "SRR11393742", "SRR11393743",
"SRR11393744", "SRR11393745", "SRR11393746", "SRR11393747", "SRR11393748", "SRR11393749", "SRR11393750",
"SRR11393751", "SRR11393752", "SRR11393753", "SRR11393754", "SRR11393755", "SRR11393756", "SRR11393757",
"SRR11393758", "SRR11393759", "SRR11393760", "SRR11393761", "SRR11393762", "SRR11393763", "SRR11393764",
"SRR11393765", "SRR11393766", "SRR11393767", "SRR11393768", "SRR11393769", "SRR11393770", "SRR11393771",
"SRR11393772", "SRR11393773", "SRR11393774", "SRR11393775", "SRR11393776", "SRR11393777", "SRR11393778", "SRR11393779"
Source
From ggpicrust2 package demonstration.
References
Douglas GM, Maffei VJ, Zaneveld J, Yurgel SN, Brown JR, Taylor CM, Huttenhower C, Langille MGI. PICRUSt2 for prediction of metagenome functions. Nat Biotechnol. 2020.
ggpicrust2 documentation built on Nov. 8, 2023, 5:08 p.m.
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| ko_abundance | R Documentation |
KO Abundance Dataset
Description
This is a demonstration dataset from the ggpicrust2 package, representing the output of PICRUSt2. Each row represents a KO (KEGG Orthology) group, and each column corresponds to a sample.
Usage
ko_abundance
Format
A data frame where rownames are KO groups and column names include #NAME and individual sample names, such as: "#NAME", "SRR11393730", "SRR11393731", "SRR11393732", "SRR11393733", "SRR11393734", "SRR11393735", "SRR11393736", "SRR11393737", "SRR11393738", "SRR11393739", "SRR11393740", "SRR11393741", "SRR11393742", "SRR11393743", "SRR11393744", "SRR11393745", "SRR11393746", "SRR11393747", "SRR11393748", "SRR11393749", "SRR11393750", "SRR11393751", "SRR11393752", "SRR11393753", "SRR11393754", "SRR11393755", "SRR11393756", "SRR11393757", "SRR11393758", "SRR11393759", "SRR11393760", "SRR11393761", "SRR11393762", "SRR11393763", "SRR11393764", "SRR11393765", "SRR11393766", "SRR11393767", "SRR11393768", "SRR11393769", "SRR11393770", "SRR11393771", "SRR11393772", "SRR11393773", "SRR11393774", "SRR11393775", "SRR11393776", "SRR11393777", "SRR11393778", "SRR11393779"
Source
From ggpicrust2 package demonstration.
References
Douglas GM, Maffei VJ, Zaneveld J, Yurgel SN, Brown JR, Taylor CM, Huttenhower C, Langille MGI. PICRUSt2 for prediction of metagenome functions. Nat Biotechnol. 2020.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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