radish2: Radish count data set
In glmm: Generalized Linear Mixed Models via Monte Carlo Likelihood Approximation

radish2

R Documentation

Radish count data set

Description

Data on life history traits for the invasive California wild radish Raphanus sativus.

Usage

data(radish2)

Format

A data frame with the following columns:

Site: Categorical. Experimental site where plant was grown. Two sites in this dataset.
Block: Categorical. Blocked nested within site.
Region: Categorical. Region from which individuals were obtained: northern, coastal California (N) or southern, inland California (S).
Pop: Categorical. Wild population nested within region.
varb: Categorical. Gives node of graphical model corresponding to each component of resp. This is useful for life history analysis (see aster package).
resp: Response vector.
id: Categorical. Indicates individual plants.

References

These data are a subset of data previously analyzed using fixed effect aster methods (R function aster) in the following.

Ridley, C. E. and Ellstrand, N. C. (2010). Rapid evolution of morphology and adaptive life history in the invasive California wild radish (Raphanus sativus) and the implications for management. Evolutionary Applications, 3, 64–76.

These data are a subset of data previously analyzed using random effect aster methods (R function reaster) in the following.

Geyer, C. J., Ridley, C. E., Latta, R. G., Etterson, J. R., and Shaw, R. G. (2013) Local Adaptation and Genetic Effects on Fitness: Calculations for Exponential Family Models with Random Effects. Annals of Applied Statistics, 7, 1778–1795. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1214/13-AOAS653")}.