glmmsr: Fit a Generalized Linear Mixed Model

Conduct inference about generalized linear mixed models, with a choice about which method to use to approximate the likelihood. In addition to the Laplace and adaptive Gaussian quadrature approximations, which are borrowed from 'lme4', the likelihood may be approximated by the sequential reduction approximation, or an importance sampling approximation. These methods provide an accurate approximation to the likelihood in some situations where it is not possible to use adaptive Gaussian quadrature.

Install the latest version of this package by entering the following in R:
install.packages("glmmsr")
AuthorHelen Ogden [aut, cre]
Date of publication2016-03-13 11:29:42
MaintainerHelen Ogden <heogden12@gmail.com>
LicenseGPL (>= 2)
Version0.1.1
http://github.com/heogden/glmmsr

View on CRAN

Files

inst
inst/continuous_beliefs.yml
inst/examples
inst/examples/chameleons.R inst/examples/three_level.R inst/examples/two_level.R
inst/RcppR6.yml
inst/cluster_graph.yml
inst/doc
inst/doc/glmmsr-vignette.pdf
inst/doc/glmmsr-vignette.Rmd
inst/doc/glmmsr-vignette.R
inst/calibration_parameters.yml
inst/include
inst/include/testingEigen.h
inst/include/NormalBelief.h
inst/include/Quadratic.h
inst/include/BeliefBase.h
inst/include/Basis.h
inst/include/ContinuousBeliefBase.h
inst/include/matrixHelper.h
inst/include/Point.h
inst/include/Family.h
inst/include/ProbitLink.h
inst/include/glmmsr.h
inst/include/LogitLink.h
inst/include/subsetEigen.h
inst/include/accessParameters.h
inst/include/BasisLevel.h
inst/include/ContinuousBelief.h
inst/include/adjacency_list_alt.h
inst/include/CoversBelief.h
inst/include/MixedContinuousBeliefVector.h
inst/include/SparseStore.h
inst/include/counting.h
inst/include/Parameters.h
inst/include/SparseGridTransform.h
inst/include/dependenceGraph.h
inst/include/QuadratureRule.h
inst/include/Binomial.h
inst/include/itemsHelper.h
inst/include/SparseGrid.h
inst/include/FamilyGivenMean.h
inst/include/Graph.h
inst/include/SparseBelief.h
inst/include/IntegratedFunction.h
inst/include/ClusterGraph.h
inst/include/GLMMBelief.h
inst/include/LinkBase.h
inst/include/FamilyBase.h
inst/include/glmmsr
inst/include/glmmsr/RcppR6_pre.hpp
inst/include/glmmsr/RcppR6_support.hpp
inst/include/glmmsr/RcppR6_post.hpp
inst/include/Link.h
inst/include/MixedContinuousBelief.h
inst/include/MultiNormal.h
tests
tests/testthat.R
tests/testthat
tests/testthat/test_utility.R tests/testthat/test_loglikelihood.R
tests/testthat/pdg_three_level.rds
tests/testthat/test_subformula.R tests/testthat/test_modify_subexpr.R
tests/testthat/subs_ability_stuff.rds
tests/testthat/test_indexing.R
tests/testthat/pdg_two_level.rds
tests/testthat/test_fit.R tests/testthat/test_model_frames.R
src
src/MixedContinuousBelief.cpp
src/Makevars
src/ContinuousBeliefBase.cpp
src/NormalBelief.cpp
src/BeliefBase.cpp
src/LinkBase.cpp
src/MixedContinuousBeliefVector.cpp
src/Quadratic.cpp
src/RcppR6.cpp
src/Link.cpp
src/Graph.cpp
src/MultiNormal.cpp
src/Binomial.cpp
src/ClusterGraph.cpp
src/FamilyBase.cpp
src/SparseStore.cpp
src/FamilyGivenMean.cpp
src/SparseGridTransform.cpp
src/counting.cpp
src/SparseGrid.cpp
src/IntegratedFunction.cpp
src/accessParameters.cpp
src/matrixHelper.cpp
src/BasisLevel.cpp
src/Parameters.cpp
src/Point.cpp
src/ProbitLink.cpp
src/ContinuousBelief.cpp
src/Basis.cpp
src/SparseBelief.cpp
src/itemsHelper.cpp
src/QuadratureRule.cpp
src/RcppExports.cpp
src/Family.cpp
src/GLMMBelief.cpp
src/LogitLink.cpp
src/subsetEigen.cpp
NAMESPACE
data
data/two_level.rda
data/three_level.rda
R
R/loglikelihood.R R/IS.R R/modify_subexpr.R R/indexing.R R/glmmFit.R R/control.R R/RcppR6.R R/utility.R R/fit.R R/RcppExports.R R/optimization.R R/glmmsr.R R/splitframe.R R/subformula.R R/model_frames.R
vignettes
vignettes/glmmsr.bib
vignettes/glmmsr-vignette.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/print.summaryGlmmFit.Rd man/glmmsr.Rd man/find_lfun_glmm.Rd man/glmmFit.Rd man/glmm.Rd man/find_approximation_name.Rd man/find_modfr_glmm.Rd man/print.glmmFit.Rd man/summary.glmmFit.Rd man/two_level.Rd man/three_level.Rd man/cluster_graph.Rd man/summaryGlmmFit.Rd man/optimize_glmm.Rd man/continuous_beliefs.Rd man/calibration_parameters.Rd

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