Man pages for glossa
User-Friendly 'shiny' App for Bayesian Species Distribution Models

buffer_polygonEnlarge/Buffer a Polygon
clean_coordinatesClean Coordinates of Presence/Absence Data
contBoyceContinuous Boyce Index (CBI) with weighting
create_coords_layerCreate Geographic Coordinate Layers
cross_validate_modelCross-validation for BART model
downloadActionButtonCreate a Download Action Button
evaluation_metricsEvaluation metrics for model predictions
export_plot_serverServer Logic for Export Plot Functionality
export_plot_uiCreate UI for Export Plot Button
extract_noNA_cov_valuesExtract Non-NA Covariate Values
file_input_area_serverServer-side Logic for Custom File Input
file_input_area_uiCustom File Input UI
fit_bart_modelFit a BART Model Using Environmental Covariate Layers
generate_cv_foldsGenerate cross-validation folds
generate_pa_buffer_outGenerate Pseudo-Absences Using Buffer-Out Strategy
generate_pa_randomGenerate Random Pseudo-Absences
generate_pa_target_groupGenerate Pseudo-Absences Using Target-Group Background
generate_prediction_plotGenerate Prediction Plot
generate_pseudo_absencesGenerate Pseudo-Absence Points Using Different Methods Based...
get_covariate_namesGet Covariate Names
getFprTprCompute specificity and sensitivity
glossa_analysisMain Analysis Function for GLOSSA Package
glossa_exportExport Glossa Model Results
invert_polygonInvert a Polygon
layer_maskApply Polygon Mask to Raster Layers
misClassErrorMisclassification Error
optimalCutoffCompute the optimal probability cutoff score
pa_optimal_cutoffOptimal Cutoff for Presence-Absence Prediction
plot_cv_folds_pointsPlot cross-validation fold assignments
plot_cv_metricsPlot cross-validation metrics
predict_bartMake Predictions Using a BART Model
read_extent_polygonRead and Validate Extent Polygon
read_layers_zipLoad Covariate Layers from ZIP Files
read_presences_absences_csvRead and validate presences/absences CSV file
remove_duplicate_pointsRemove Duplicated Points from a Dataframe
remove_points_polygonRemove Points Inside or Outside a Polygon
response_curve_bartCalculate Response Curve Using BART Model
run_glossaRun GLOSSA Shiny App
sensitivityCalculate the sensitivity for a given logit model
sparkvalueBoxCreate a Sparkline Value Box
specificityCalculate the specificity for a given logit model
validate_fit_projection_layersValidate Fit and Projection Layers
validate_layers_zipValidate Layers Zip
validate_pa_fit_timeValidate Match Between Presence/Absence Files and Fit Layers
variable_importanceVariable Importance in BART Model
youdensIndexCalculate Youden's index
glossa documentation built on June 8, 2025, 1:20 p.m.