Man pages for glossa
User-Friendly 'shiny' App for Bayesian Species Distribution Models

buffer_polygonEnlarge/Buffer a Polygon
clean_coordinatesClean Coordinates of Presence/Absence Data
create_coords_layerCreate Geographic Coordinate Layers
cv_bartCross-Validation for BART Model
downloadActionButtonCreate a Download Action Button
export_plot_serverServer Logic for Export Plot Functionality
export_plot_uiCreate UI for Export Plot Button
extract_noNA_cov_valuesExtract Non-NA Covariate Values
file_input_area_serverServer-side Logic for Custom File Input
file_input_area_uiCustom File Input UI
fit_bart_modelFit a BART Model Using Environmental Covariate Layers
generate_cv_plotGenerate Cross-Validation Plot
generate_prediction_plotGenerate Prediction Plot
generate_pseudo_absencesGenerate Pseudo-Absence Points Based on Presence Points,...
get_covariate_namesGet Covariate Names
getFprTprCompute specificity and sensitivity
glossa_analysisMain Analysis Function for GLOSSA Package
glossa_exportExport Glossa Model Results
invert_polygonInvert a Polygon
layer_maskApply Polygon Mask to Raster Layers
misClassErrorMisclassification Error
optimalCutoffCompute the optimal probability cutoff score
pa_optimal_cutoffOptimal Cutoff for Presence-Absence Prediction
predict_bartMake Predictions Using a BART Model
read_extent_polygonRead and Validate Extent Polygon
read_layers_zipLoad Covariate Layers from ZIP Files
read_presences_absences_csvRead and validate presences/absences CSV file
remove_duplicate_pointsRemove Duplicated Points from a Dataframe
remove_points_polygonRemove Points Inside or Outside a Polygon
response_curve_bartCalculate Response Curve Using BART Model
run_glossaRun GLOSSA Shiny App
sensitivityCalculate the sensitivity for a given logit model
sparkvalueBoxCreate a Sparkline Value Box
specificityCalculate the specificity for a given logit model
validate_fit_projection_layersValidate Fit and Projection Layers
validate_layers_zipValidate Layers Zip
validate_pa_fit_timeValidate Match Between Presence/Absence Files and Fit Layers
variable_importanceVariable Importance in BART Model
youdensIndexCalculate Youden's index
glossa documentation built on Oct. 15, 2024, 5:08 p.m.