View source: R/glossa_analysis.R
glossa_analysis | R Documentation |
This function wraps all the analysis that the GLOSSA package performs. It processes presence-absence data, environmental covariates, and performs species distribution modeling and projections under past and future scenarios.
glossa_analysis(
pa_data = NULL,
fit_layers = NULL,
proj_files = NULL,
study_area_poly = NULL,
predictor_variables = NULL,
decimal_digits = NULL,
scale_layers = FALSE,
buffer = NULL,
native_range = NULL,
suitable_habitat = NULL,
other_analysis = NULL,
seed = NA,
waiter = NULL
)
pa_data |
A list of data frames containing presence-absence data. |
fit_layers |
A SpatRaster stack containing model fitting environmental layers. |
proj_files |
A list of file paths containing environmental layers for projection scenarios. |
study_area_poly |
A spatial polygon defining the study area. |
predictor_variables |
A list of predictor variables to be used in the analysis. |
decimal_digits |
An integer specifying the number of decimal places to which coordinates should be rounded. |
scale_layers |
Logical; if TRUE, covariate layers will be scaled based on fit layers. |
buffer |
Buffer value or distance in decimal degrees (arc_degrees). |
native_range |
A vector of scenarios ('fit_layers', 'projections') where native range modeling should be performed. |
suitable_habitat |
A vector of scenarios ('fit_layers', 'projections') where habitat suitability modeling should be performed. |
other_analysis |
A vector of additional analyses to perform (e.g., 'variable_importance', 'functional_responses', 'cross_validation'). |
seed |
Optional; an integer seed for reproducibility of results. |
waiter |
Optional; a waiter instance to update progress in a Shiny application. |
A list containing structured outputs from each major section of the analysis, including model data, projections, variable importance scores, and habitat suitability assessments.
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