Man pages for glossa
User-Friendly 'shiny' App for Bayesian Species Distribution Models
| buffer_polygon | Enlarge/Buffer a Polygon |
| clean_coordinates | Clean Coordinates of Presence/Absence Data |
| contBoyce | Continuous Boyce Index (CBI) with weighting |
| create_coords_layer | Create Geographic Coordinate Layers |
| cross_validate_model | Cross-validation for BART model |
| downloadActionButton | Create a Download Action Button |
| evaluation_metrics | Evaluation metrics for model predictions |
| export_plot_server | Server Logic for Export Plot Functionality |
| export_plot_ui | Create UI for Export Plot Button |
| extract_noNA_cov_values | Extract Non-NA Covariate Values |
| file_input_area_server | Server-side Logic for Custom File Input |
| file_input_area_ui | Custom File Input UI |
| fit_bart_model | Fit a BART Model Using Environmental Covariate Layers |
| generate_cv_folds | Generate cross-validation folds |
| generate_pa_buffer_out | Generate Pseudo-Absences Using Buffer-Out Strategy |
| generate_pa_env_space_flexsdm | Generate Environmental-space Pseudo-Absences via flexsdm (per... |
| generate_pa_random | Generate Random Pseudo-Absences |
| generate_pa_target_group | Generate Pseudo-Absences Using Target-Group Background |
| generate_prediction_plot | Generate Prediction Plot |
| generate_pseudo_absences | Generate Pseudo-Absence Points Using Different Methods Based... |
| get_covariate_names | Get Covariate Names |
| getFprTpr | Compute specificity and sensitivity |
| glossa_analysis | Main Analysis Function for GLOSSA Package |
| glossa_export | Export Glossa Model Results |
| invert_polygon | Invert a Polygon |
| layer_mask | Apply Polygon Mask to Raster Layers |
| misClassError | Misclassification Error |
| optimalCutoff | Compute the optimal probability cutoff score |
| pa_optimal_cutoff | Optimal Cutoff for Presence-Absence Prediction |
| plot_cv_folds_points | Plot cross-validation fold assignments |
| plot_cv_metrics | Plot cross-validation metrics |
| predict_bart | Make Predictions Using a BART Model |
| read_extent_polygon | Read and Validate Extent Polygon |
| read_layers_zip | Load Covariate Layers from ZIP Files |
| read_presences_absences_csv | Read and validate presences/absences CSV file |
| remove_duplicate_points | Remove Duplicated Points from a Dataframe |
| remove_points_polygon | Remove Points Inside or Outside a Polygon |
| response_curve_bart | Calculate Response Curve Using BART Model |
| run_glossa | Run GLOSSA Shiny App |
| sensitivity | Calculate the sensitivity for a given logit model |
| sparkvalueBox | Create a Sparkline Value Box |
| specificity | Calculate the specificity for a given logit model |
| validate_fit_projection_layers | Validate Fit and Projection Layers |
| validate_layers_zip | Validate Layers Zip |
| validate_pa_fit_time | Validate Match Between Presence/Absence Files and Fit Layers |
| variable_importance | Variable Importance in BART Model |
| youdensIndex | Calculate Youden's index |
