glycanr: Tools for Analysing N-Glycan Data
Version 0.3.0

Useful utilities in N-glycan data analysis. This package tries to fill the gap in N-glycan data analysis by providing easy to use functions for basic operations on data (see https://en.wikipedia.org/wiki/Glycomics for more details on Glycomics). At the moment glycanr is mostly oriented to data obtained by UPLC and LCMS analysis of Plasma and IgG glycome.

Browse man pages Browse package API and functions Browse package files

AuthorIvo Ugrina [aut, cre, cph], Lucija Klaric [aut], Frano Vuckovic [aut]
Date of publication2016-04-07 18:27:27
MaintainerIvo Ugrina <ivo@iugrina.com>
LicenseMIT + file LICENSE
Version0.3.0
URL https://github.com/iugrina/glycanr
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("glycanr")

Man pages

glyco.outliers: Discover outliers in glycan data
glyco.plot: Plot data representing Glycans in boxplot or violin mode...
ildt: Derived traits for Glycan peaks in IgG for LCMS
ildt.translate: Translate names between computer readable and human readable...
iudt: Derived traits for Glycan peaks in IgG for UPLC
iudt.translate: Translate names between computer readable and human readable...
mediannorm: Median Normalization of glycan data
medianquotientnorm: Median Quotient Normalization of glycan data
mpiu: Multiple plates IgG UPLC data example
mpiunorm: Normalized mpiu data
phdt: Derived traits for Glycan peaks in PLASMA for HPLC
quantilenorm: Quantile Normalization of glycan data
refpeaknorm: Reference Peak Normalization of glycan data
tanorm: Total Area Normalization of glycan data

Functions

dteh Source code
glyco.outliers Man page Source code
glyco.plot Man page Source code
igg.lcms.derived.traits.2014 Source code
igg.uplc.derived.traits.2014 Source code
ildt Man page Source code
ildt.translate Man page Source code
ildt.translate.2014 Source code
iudt Man page Source code
iudt.translate Man page Source code
iudt.translate.2014 Source code
mediannorm Man page Source code
mediannorm_basic Source code
mediannorm_groups Source code
medianquotientnorm Man page Source code
medianquotientnorm_basic Source code
medianquotientnorm_groups Source code
mpiu Man page
mpiunorm Man page
onAttach Source code
phdt Man page Source code
plasma.hplc.derived.traits.2011 Source code
quantilenorm Man page Source code
quantilenorm_basic Source code
quantilenorm_groups Source code
refpeaknorm Man page Source code
refpeaknorm_basic Source code
refpeaknorm_groups Source code
tanorm Man page Source code
tanorm_basic Source code
tanorm_groups Source code

Files

inst
inst/doc
inst/doc/plots.html
inst/doc/plots.Rmd
inst/doc/plots.R
inst/doc/introduction.html
inst/doc/introduction.Rmd
tests
tests/testthat.R
tests/testthat
tests/testthat/test_normalization.R
NAMESPACE
NEWS.md
data
data/mpiunorm.RData
data/mpiu.RData
R
R/glyco.plot.R
R/normalization.R
R/glycanrinfo.R
R/derived.traits.R
R/derived.traits.2011.R
R/glyco.outliers.R
R/error.R
R/derived.traits.2014.R
R/handlers.R
vignettes
vignettes/plots.Rmd
vignettes/introduction.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/ildt.translate.Rd
man/iudt.Rd
man/mpiunorm.Rd
man/mpiu.Rd
man/tanorm.Rd
man/refpeaknorm.Rd
man/ildt.Rd
man/medianquotientnorm.Rd
man/phdt.Rd
man/mediannorm.Rd
man/iudt.translate.Rd
man/quantilenorm.Rd
man/glyco.plot.Rd
man/glyco.outliers.Rd
LICENSE
glycanr documentation built on May 19, 2017, 9:59 p.m.