glycanr: Tools for Analysing N-Glycan Data

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Useful utilities in N-glycan data analysis. This package tries to fill the gap in N-glycan data analysis by providing easy to use functions for basic operations on data (see https://en.wikipedia.org/wiki/Glycomics for more details on Glycomics). At the moment glycanr is mostly oriented to data obtained by UPLC and LCMS analysis of Plasma and IgG glycome.

Author
Ivo Ugrina [aut, cre, cph], Lucija Klaric [aut], Frano Vuckovic [aut]
Date of publication
2016-04-07 18:27:27
Maintainer
Ivo Ugrina <ivo@iugrina.com>
License
MIT + file LICENSE
Version
0.3.0
URLs

View on CRAN

Man pages

glyco.outliers
Discover outliers in glycan data
glyco.plot
Plot data representing Glycans in boxplot or violin mode...
ildt
Derived traits for Glycan peaks in IgG for LCMS
ildt.translate
Translate names between computer readable and human readable...
iudt
Derived traits for Glycan peaks in IgG for UPLC
iudt.translate
Translate names between computer readable and human readable...
mediannorm
Median Normalization of glycan data
medianquotientnorm
Median Quotient Normalization of glycan data
mpiu
Multiple plates IgG UPLC data example
mpiunorm
Normalized mpiu data
phdt
Derived traits for Glycan peaks in PLASMA for HPLC
quantilenorm
Quantile Normalization of glycan data
refpeaknorm
Reference Peak Normalization of glycan data
tanorm
Total Area Normalization of glycan data

Files in this package

glycanr
glycanr/inst
glycanr/inst/doc
glycanr/inst/doc/plots.html
glycanr/inst/doc/plots.Rmd
glycanr/inst/doc/plots.R
glycanr/inst/doc/introduction.html
glycanr/inst/doc/introduction.Rmd
glycanr/tests
glycanr/tests/testthat.R
glycanr/tests/testthat
glycanr/tests/testthat/test_normalization.R
glycanr/NAMESPACE
glycanr/NEWS.md
glycanr/data
glycanr/data/mpiunorm.RData
glycanr/data/mpiu.RData
glycanr/R
glycanr/R/glyco.plot.R
glycanr/R/normalization.R
glycanr/R/glycanrinfo.R
glycanr/R/derived.traits.R
glycanr/R/derived.traits.2011.R
glycanr/R/glyco.outliers.R
glycanr/R/error.R
glycanr/R/derived.traits.2014.R
glycanr/R/handlers.R
glycanr/vignettes
glycanr/vignettes/plots.Rmd
glycanr/vignettes/introduction.Rmd
glycanr/README.md
glycanr/MD5
glycanr/build
glycanr/build/vignette.rds
glycanr/DESCRIPTION
glycanr/man
glycanr/man/ildt.translate.Rd
glycanr/man/iudt.Rd
glycanr/man/mpiunorm.Rd
glycanr/man/mpiu.Rd
glycanr/man/tanorm.Rd
glycanr/man/refpeaknorm.Rd
glycanr/man/ildt.Rd
glycanr/man/medianquotientnorm.Rd
glycanr/man/phdt.Rd
glycanr/man/mediannorm.Rd
glycanr/man/iudt.translate.Rd
glycanr/man/quantilenorm.Rd
glycanr/man/glyco.plot.Rd
glycanr/man/glyco.outliers.Rd
glycanr/LICENSE