plot.gpmap: Functions for creating lineplots of genotype-phenotype (GP)...

In gpmap: Analysing and Plotting Genotype-Phenotype Maps

Description

Function for creating lineplots for genotype-phenotype (GP) map (an object of class gpmap) with 1-3 biallelic loci.

Usage

 
## S3 method for class 'gpmap'
plot(x, show=1, decomposed=FALSE, ...)

Arguments

x	A gpmap object
show	Which map (only used if >1 map in gpmap object) to plot
decomposed	Decomposition into monotone and non-monotone component plotted if TRUE
...	ignored

Author(s)

Arne B. Gjuvsland <[e-mail]> and Yunpeng Wang <[e-mail]>

Examples

data(GPmaps)

#plot additive gpmap
plot(A)

#plot decomposition of GPmap from Cheverud & Routman (1995)
decomp <- decompose_monotone(mouseweight)
plot(decomp, decomposed=TRUE)

Example output

Loading required package: isotone
Loading required package: plyr
Loading required package: ggplot2
Loading required package: foreach
[[1]]

Warning message:
executing %dopar% sequentially: no parallel backend registered 
[[1]]

gpmap documentation built on Feb. 16, 2021, 1:06 a.m.