graphscan: Cluster Detection with Hypothesis Free Scan Statistic

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Multiple scan statistic with variable window for one dimension data and scan statistic based on connected components in 2D or 3D.

Author
Robin Loche, Benoit Giron, David Abrial, Lionel Cucala, Myriam Charras-Garrido, Jocelyn De-Goer
Date of publication
2016-10-14 16:22:50
Maintainer
David Abrial <graphscan@clermont.inra.fr>
License
GPL-2 | GPL-3
Version
1.1.1

View on CRAN

Man pages

barplot
Barplot of the 1D clusters lengths.
cluster
Performs cluster analysis on 'graphscan' class object.
events_series
A 1D cluster example: events series example.
france_two_clusters
A 2D cluster example: France with two clusters.
graphscan
Cluster detection with hypothesis free scan statistic
graphscan_1d
Creates objects of class 'graphscan' using 1D data.
graphscan-class
Class '"graphscan"'
graphscan_nd
Creates objects of class 'graphscan' using 2D or 3D data.
graphscan-plot
Plot clusters localisations or the 1D events distributions.
sample3d
A 3D cluster example.
summary
Summarize a graphscan object.

Files in this package

graphscan
graphscan/inst
graphscan/inst/NEWS.Rd
graphscan/inst/extdata
graphscan/inst/extdata/sequence02_test.fna
graphscan/inst/extdata/sequence01_test.fna
graphscan/inst/doc
graphscan/inst/doc/graphscan.pdf
graphscan/src
graphscan/src/Makevars
graphscan/src/cucala_methode.c
graphscan/src/detection_agregat.c
graphscan/src/fonction_math.c
graphscan/src/unif_aleat.c
graphscan/src/2D_types.h
graphscan/src/rbtree.c
graphscan/src/qsort_elem.h
graphscan/src/unif_aleat.h
graphscan/src/rbtree.h
graphscan/src/cucala_methode.h
graphscan/src/types.h
graphscan/src/fonction_math.h
graphscan/src/2D_fonction_math.c
graphscan/src/detection_agregat.h
graphscan/src/2D_detection_cluster.c
graphscan/src/2D_fonction_math.h
graphscan/src/2D_detection_cluster.h
graphscan/src/get_number_proc.c
graphscan/NAMESPACE
graphscan/data
graphscan/data/events_series.rda
graphscan/data/sample3d.rda
graphscan/data/france_two_clusters.rda
graphscan/R
graphscan/R/graphscan_1d.R
graphscan/R/graphscan_1d_dnabin.R
graphscan/R/graphscan_cluster.R
graphscan/R/graphscan_plot.cluster.R
graphscan/R/graphscan_get_number_proc.R
graphscan/R/graphscan_1d_plot.cluster.one.1d.R
graphscan/R/graphscan_1d_plot.cluster.all.1d.R
graphscan/R/graphscan_nd.R
graphscan/R/graphscan.R
graphscan/R/graphscan_3d_plot.cluster.3d.R
graphscan/R/graphscan_1d_list.R
graphscan/R/graphscan_1d_character.R
graphscan/R/graphscan_1d_array_function.R
graphscan/R/graphscan_1d_plot.cluster.serie.1d.R
graphscan/R/graphscan_summary.R
graphscan/R/graphscan_1d_barplot.cluster.1d.R
graphscan/R/graphscan_3d_plot.cluster.3d.projection.R
graphscan/R/graphscan_2d_plot.cluster.2d.R
graphscan/MD5
graphscan/DESCRIPTION
graphscan/man
graphscan/man/graphscan-plot.Rd
graphscan/man/graphscan_nd.Rd
graphscan/man/graphscan.Rd
graphscan/man/france_two_clusters.Rd
graphscan/man/barplot.Rd
graphscan/man/cluster.Rd
graphscan/man/graphscan_1d.Rd
graphscan/man/events_series.Rd
graphscan/man/sample3d.Rd
graphscan/man/summary.Rd
graphscan/man/graphscan-class.Rd