Multiple scan statistic with variable window for one dimension data and scan statistic based on connected components in 2D or 3D.

Author | Robin Loche, Benoit Giron, David Abrial, Lionel Cucala, Myriam Charras-Garrido, Jocelyn De-Goer |

Date of publication | 2016-10-14 16:22:50 |

Maintainer | David Abrial <graphscan@clermont.inra.fr> |

License | GPL-2 | GPL-3 |

Version | 1.1.1 |

**barplot:** Barplot of the 1D clusters lengths.

**cluster:** Performs cluster analysis on 'graphscan' class object.

**events_series:** A 1D cluster example: events series example.

**france_two_clusters:** A 2D cluster example: France with two clusters.

**graphscan:** Cluster detection with hypothesis free scan statistic

**graphscan_1d:** Creates objects of class 'graphscan' using 1D data.

**graphscan-class:** Class '"graphscan"'

**graphscan_nd:** Creates objects of class 'graphscan' using 2D or 3D data.

**graphscan-plot:** Plot clusters localisations or the 1D events distributions.

**sample3d:** A 3D cluster example.

**summary:** Summarize a graphscan object.

graphscan

graphscan/inst

graphscan/inst/NEWS.Rd

graphscan/inst/extdata

graphscan/inst/extdata/sequence02_test.fna

graphscan/inst/extdata/sequence01_test.fna

graphscan/inst/doc

graphscan/inst/doc/graphscan.pdf

graphscan/src

graphscan/src/Makevars

graphscan/src/cucala_methode.c

graphscan/src/detection_agregat.c

graphscan/src/fonction_math.c

graphscan/src/unif_aleat.c

graphscan/src/2D_types.h

graphscan/src/rbtree.c

graphscan/src/qsort_elem.h

graphscan/src/unif_aleat.h

graphscan/src/rbtree.h

graphscan/src/cucala_methode.h

graphscan/src/types.h

graphscan/src/fonction_math.h

graphscan/src/2D_fonction_math.c

graphscan/src/detection_agregat.h

graphscan/src/2D_detection_cluster.c

graphscan/src/2D_fonction_math.h

graphscan/src/2D_detection_cluster.h

graphscan/src/get_number_proc.c

graphscan/NAMESPACE

graphscan/data

graphscan/data/events_series.rda

graphscan/data/sample3d.rda

graphscan/data/france_two_clusters.rda

graphscan/R

graphscan/R/graphscan_1d.R
graphscan/R/graphscan_1d_dnabin.R
graphscan/R/graphscan_cluster.R
graphscan/R/graphscan_plot.cluster.R
graphscan/R/graphscan_get_number_proc.R
graphscan/R/graphscan_1d_plot.cluster.one.1d.R
graphscan/R/graphscan_1d_plot.cluster.all.1d.R
graphscan/R/graphscan_nd.R
graphscan/R/graphscan.R
graphscan/R/graphscan_3d_plot.cluster.3d.R
graphscan/R/graphscan_1d_list.R
graphscan/R/graphscan_1d_character.R
graphscan/R/graphscan_1d_array_function.R
graphscan/R/graphscan_1d_plot.cluster.serie.1d.R
graphscan/R/graphscan_summary.R
graphscan/R/graphscan_1d_barplot.cluster.1d.R
graphscan/R/graphscan_3d_plot.cluster.3d.projection.R
graphscan/R/graphscan_2d_plot.cluster.2d.R
graphscan/MD5

graphscan/DESCRIPTION

graphscan/man

graphscan/man/graphscan-plot.Rd
graphscan/man/graphscan_nd.Rd
graphscan/man/graphscan.Rd
graphscan/man/france_two_clusters.Rd
graphscan/man/barplot.Rd
graphscan/man/cluster.Rd
graphscan/man/graphscan_1d.Rd
graphscan/man/events_series.Rd
graphscan/man/sample3d.Rd
graphscan/man/summary.Rd
graphscan/man/graphscan-class.Rd
Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

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