growthrates: Estimate Growth Rates from Experimental Data

Share:

A collection of methods to determine growth rates from experimental data, in particular from batch experiments and plate reader trials.

Author
Thomas Petzoldt
Date of publication
2016-03-14 07:54:21
Maintainer
Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
License
GPL (>= 2)
Version
0.6.5
URLs

View on CRAN

Man pages

all_easylinear
Easy Growth Rates Fit to data Frame
all_growthmodels
Fit Nonlinear Growth Models to Data Frame
all_splines
Fit Exponential Growth Model with Smoothing Spline
bactgrowth
Plate Reader Data of Bacterial Growth
cost
Cost Function for Nonlinear Fits
extract
Extract or Replace Parts of a 'multiple_fits' Object
fit_easylinear
Fit Exponential Growth Model with a Heuristic Linear Method
fit_growthmodel
Fit Nonlinear Parametric Growth Model
fit_spline
Fit Exponential Growth Model with Smoothing Spline
function_growthmodel-class
Union Class of Growth Model or Function
generics
Additional Generic Functions
grow_baranyi
The Baranyi and Roberts Growth Model
grow_exponential
Exponential Growth Model
grow_genlogistic
Generalized Logistic Growth Model
grow_gompertz
Growth Model According to Gompertz
grow_huang
Growth Model According to Huang
grow_logistic
Logistic Growth Model
grow_richards
Growth Model According to Richards
growthmodel-class
Class of Growth Model Functions
growthmodel-constructor
Create a User-defined Parametric Growth Model
growthrates-classes
S4 Classes of Package 'growthrates'
growthrates-package
Estimate Growth Rates from Experimental Data
grow_twostep
Twostep Growth Model
lm_window
Fit Exponential Growth Model with a Heuristic Linear Method
methods
Accessor Methods of Package 'growthrates'.
multisplit
Split Data Frame into Multiple Groups
names
Get Names Attributes of Growth Models
parse_formula
Simple Formula Interface
parse_formula_nonlin
Simple Formula Interface for Grouped Nonlinear Functions
plot
Plot Model Fits

Files in this package

growthrates
growthrates/inst
growthrates/inst/doc
growthrates/inst/doc/examples
growthrates/inst/doc/examples/example_growthmodel.R
growthrates/inst/doc/examples/import_grofit_data.R
growthrates/inst/doc/examples/benchmark_compiled_ode.R
growthrates/inst/doc/examples/example_huang_p_as_df.R
growthrates/inst/doc/examples/example_huang.R
growthrates/inst/doc/examples/example_user_defined_growthmodel.R
growthrates/inst/doc/examples/example_user_defined_ode_compiled.R
growthrates/inst/doc/examples/example_easylinear.R
growthrates/inst/doc/examples/example_spline.R
growthrates/inst/doc/examples/startvalue_heuristics.R
growthrates/inst/doc/examples/example_masking.R
growthrates/inst/doc/examples/example_baranyi.R
growthrates/inst/doc/examples/example_user_defined_ode_model.R
growthrates/inst/doc/Introduction.Rmd
growthrates/inst/doc/Introduction.R
growthrates/inst/doc/Introduction.pdf
growthrates/inst/doc/User_models.pdf
growthrates/inst/doc/User_models.R
growthrates/inst/doc/User_models.Rmd
growthrates/src
growthrates/src/twostep.c
growthrates/src/genlogistic.c
growthrates/NAMESPACE
growthrates/demo
growthrates/demo/growthrates.R
growthrates/demo/00Index
growthrates/data
growthrates/data/bactgrowth.txt.gz
growthrates/R
growthrates/R/grow_twostep.R
growthrates/R/parse_formula.R
growthrates/R/aac_classes.R
growthrates/R/multisplit.R
growthrates/R/fit_growthmodel.R
growthrates/R/cost.R
growthrates/R/all_growthmodels.R
growthrates/R/plot.R
growthrates/R/fit_spline.R
growthrates/R/all_splines.R
growthrates/R/growthrates-package.R
growthrates/R/utilities.R
growthrates/R/grow_logistic.R
growthrates/R/methods.R
growthrates/R/grow_gompertz.R
growthrates/R/aab_growthmodel-constructor.R
growthrates/R/grow_exponential.R
growthrates/R/fit_easylinear.R
growthrates/R/grow_genlogistic.R
growthrates/R/grow_huang.R
growthrates/R/extract.R
growthrates/R/names.R
growthrates/R/grow_baranyi.R
growthrates/R/parse_formula_nonlin.R
growthrates/R/all_easylinear.R
growthrates/R/grow_richards.R
growthrates/R/aad_set_generics.R
growthrates/R/aaa_growthmodel-class.R
growthrates/R/bactgrowth.R
growthrates/R/lm_window.R
growthrates/vignettes
growthrates/vignettes/Introduction.Rmd
growthrates/vignettes/growthrates.bib
growthrates/vignettes/User_models.Rmd
growthrates/MD5
growthrates/build
growthrates/build/vignette.rds
growthrates/DESCRIPTION
growthrates/man
growthrates/man/fit_easylinear.Rd
growthrates/man/all_easylinear.Rd
growthrates/man/grow_genlogistic.Rd
growthrates/man/names.Rd
growthrates/man/growthmodel-class.Rd
growthrates/man/cost.Rd
growthrates/man/parse_formula.Rd
growthrates/man/parse_formula_nonlin.Rd
growthrates/man/all_splines.Rd
growthrates/man/lm_window.Rd
growthrates/man/all_growthmodels.Rd
growthrates/man/fit_growthmodel.Rd
growthrates/man/grow_twostep.Rd
growthrates/man/growthrates-package.Rd
growthrates/man/generics.Rd
growthrates/man/function_growthmodel-class.Rd
growthrates/man/fit_spline.Rd
growthrates/man/growthmodel-constructor.Rd
growthrates/man/growthrates-classes.Rd
growthrates/man/grow_logistic.Rd
growthrates/man/grow_baranyi.Rd
growthrates/man/grow_richards.Rd
growthrates/man/grow_exponential.Rd
growthrates/man/multisplit.Rd
growthrates/man/methods.Rd
growthrates/man/bactgrowth.Rd
growthrates/man/grow_gompertz.Rd
growthrates/man/grow_huang.Rd
growthrates/man/plot.Rd
growthrates/man/extract.Rd