gsalib: Utility Functions For GATK
Version 2.1

This package contains utility functions used by the Genome Analysis Toolkit (GATK) to load tables and plot data. The GATK is a toolkit for variant discovery in high-throughput sequencing data.

AuthorKiran Garimella
Date of publication2014-12-10 08:09:01
MaintainerGeraldine Van der Auwera <vdauwera@broadinstitute.org>
LicenseMIT + file LICENSE
Version2.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("gsalib")

Getting started

Package overview

Popular man pages

gsalib-internal: Internal gsalib objects
gsalib-package: Utility functions for GATK
gsa.read.gatkreport: Function to read in a GATKReport
gsa.read.gatkreportv0: Function to read in an old-style GATKReport
gsa.read.gatkreportv1: Function to read in a new-style GATKReport
test_gatkreport.table: Test table for version 1.x GATKReport
See all...

All man pages Function index File listing

Man pages

gsalib-internal: Internal gsalib objects
gsalib-package: Utility functions for GATK
gsa.read.gatkreport: Function to read in a GATKReport
gsa.read.gatkreportv0: Function to read in an old-style GATKReport
gsa.read.gatkreportv1: Function to read in a new-style GATKReport
test_gatkreport.table: Test table for version 1.x GATKReport

Functions

.gsa.assignGATKTableToEnvironment Man page
.gsa.splitFixedWidth Man page
gatkreport_test_v1.table Man page
gsa.assignGATKTableToEnvironment Source code
gsa.read.gatkreport Man page Source code
gsa.read.gatkreportv0 Man page Source code
gsa.read.gatkreportv1 Man page Source code
gsa.splitFixedWidth Source code
gsalib Man page
gsalib-package Man page

Files

inst
inst/extdata
inst/extdata/test_gatkreport.table
NAMESPACE
R
R/gsa.read.gatkreport.R
MD5
DESCRIPTION
man
man/gsa.read.gatkreport.Rd
man/test_gatkreport.table.Rd
man/gsalib-package.Rd
man/gsa.read.gatkreportv0.Rd
man/gsa.read.gatkreportv1.Rd
man/gsalib-internal.Rd
LICENSE
gsalib documentation built on May 19, 2017, 10:21 p.m.

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