gsalib: Utility Functions For GATK

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This package contains utility functions used by the Genome Analysis Toolkit (GATK) to load tables and plot data. The GATK is a toolkit for variant discovery in high-throughput sequencing data.

Author
Kiran Garimella
Date of publication
2014-12-10 08:09:01
Maintainer
Geraldine Van der Auwera <vdauwera@broadinstitute.org>
License
MIT + file LICENSE
Version
2.1

View on CRAN

Man pages

gsalib-internal
Internal gsalib objects
gsalib-package
Utility functions for GATK
gsa.read.gatkreport
Function to read in a GATKReport
gsa.read.gatkreportv0
Function to read in an old-style GATKReport
gsa.read.gatkreportv1
Function to read in a new-style GATKReport
test_gatkreport.table
Test table for version 1.x GATKReport

Files in this package

gsalib
gsalib/inst
gsalib/inst/extdata
gsalib/inst/extdata/test_gatkreport.table
gsalib/NAMESPACE
gsalib/R
gsalib/R/gsa.read.gatkreport.R
gsalib/MD5
gsalib/DESCRIPTION
gsalib/man
gsalib/man/gsa.read.gatkreport.Rd
gsalib/man/test_gatkreport.table.Rd
gsalib/man/gsalib-package.Rd
gsalib/man/gsa.read.gatkreportv0.Rd
gsalib/man/gsa.read.gatkreportv1.Rd
gsalib/man/gsalib-internal.Rd
gsalib/LICENSE