gsa.read.gatkreportv1: Function to read in a new-style GATKReport

In gsalib: Utility Functions for 'GATK'

Function to read in a new-style GATKReport

Description

This function reads in data from a version 1.x GATKReport. It should not be called directly; instead, use gsa.read.gatkreport()

Usage

gsa.read.gatkreportv1(lines)

Arguments

lines

The lines read in from the input file.

Value

Returns a LIST object, where each key is the TableName and the value is the data.frame object with the contents of the table. If multiple tables with the same name exist, each one after the first will be given names of TableName.v1, TableName.v2, ..., TableName.vN.

Author(s)

Kiran Garimella

References

https://gatk.broadinstitute.org/hc/en-us/articles/360035532172-GATKReport-and-gsalib

gsalib documentation built on Oct. 8, 2022, 1:06 a.m.