compute.nn.edges: 3. compute nearest neighbor graph for genes and cells This...

In gsdensity: Density-Based Gene Set Specificity Evaluation

3. compute nearest neighbor graph for genes and cells This graph will be used for fetching the most relevant cells of a gene set

Description

3. compute nearest neighbor graph for genes and cells This graph will be used for fetching the most relevant cells of a gene set

Usage

## S3 method for class 'nn.edges'
compute(coembed, nn.use = 300)

Arguments

coembed	the result from compute.mca
nn.use	the number of nearest neighbors for building the graph; default 300

Value

nearest neighbor graph (edges)

Examples

compute.nn.edges(coembed = ce)

gsdensity documentation built on March 31, 2023, 8:32 p.m.