sample.spatial.kld: this function is called by 'compute.spatial.kld' to calculate...
In gsdensity: Density-Based Gene Set Specificity Evaluation
View source: R/gsdensity_functions.R
sample.spatial.kld R Documentation
this function is called by 'compute.spatial.kld' to calculate the kl-divergence between
cell-weighted with shuffled weight vector and the ref (all cells, unweighted)
Description
this function is called by 'compute.spatial.kld' to calculate the kl-divergence between
cell-weighted with shuffled weight vector and the ref (all cells, unweighted)
Usage
sample.spatial.kld(weight_vec, spatial.coords, n, ref)
Arguments
weight_vec
weight_vec
spatial.coords
spatial.coords
n
n
ref
ref
Value
returns randomly sampled spatial klds for gene sets
gsdensity documentation built on March 31, 2023, 8:32 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/gsdensity_functions.R
| sample.spatial.kld | R Documentation |
this function is called by 'compute.spatial.kld' to calculate the kl-divergence between cell-weighted with shuffled weight vector and the ref (all cells, unweighted)
Description
this function is called by 'compute.spatial.kld' to calculate the kl-divergence between cell-weighted with shuffled weight vector and the ref (all cells, unweighted)
Usage
sample.spatial.kld(weight_vec, spatial.coords, n, ref)
Arguments
weight_vec |
weight_vec |
spatial.coords |
spatial.coords |
n |
n |
ref |
ref |
Value
returns randomly sampled spatial klds for gene sets
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.