esc: Embryonic Stem Cell from Mouse

escR Documentation

Embryonic Stem Cell from Mouse

Description

Data concerning mouse embryonic stem cell gene expression and transcription factor association strength.

Usage

data(esc)

Format

A data frame containing 1027 genes with the following variables.

y1 Gene expression after 4 days.
y2 Gene expression after 8 days.
y3 Gene expression after 14 days.
klf4 Score of TFAS with KLF4.
nanog Score of TFAS with NANOG.
oct4 Score of TFAS with OCT4.
sox2 Score of TFAS with SOX2.
clusterID Cluster identification.

References

Cai, J., Xie, D., Fan, Z., Chipperfield, H., Marden, J., Wong, W. H., and Zhong, S. (2010), Modeling co-expression across species for complex traits: insights to the difference of human and mouse embryonic stem cells. PLoS Computational Biology, 6, e1000707.

Ouyang, Z., Zhou, Q., and Wong, W. H. (2009), chip-seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells. Proceedings of the National Academy of Sciences of USA, 106, 21521–21526.


gss documentation built on Aug. 16, 2023, 9:07 a.m.

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