esc: Embryonic Stem Cell from Mouse
In gss: General Smoothing Splines
esc R Documentation
Embryonic Stem Cell from Mouse
Description
Data concerning mouse embryonic stem cell gene expression and
transcription factor association strength.
Usage
data(esc)
Format
A data frame containing 1027 genes with the following variables.
y1 Gene expression after 4 days.
y2 Gene expression after 8 days.
y3 Gene expression after 14 days.
klf4 Score of TFAS with KLF4.
nanog Score of TFAS with NANOG.
oct4 Score of TFAS with OCT4.
sox2 Score of TFAS with SOX2.
clusterID Cluster identification.
References
Cai, J., Xie, D., Fan, Z., Chipperfield, H., Marden, J., Wong,
W. H., and Zhong, S. (2010), Modeling co-expression across species
for complex traits: insights to the difference of human and mouse
embryonic stem cells. PLoS Computational Biology, 6,
e1000707.
Ouyang, Z., Zhou, Q., and Wong, W. H. (2009), chip-seq of
transcription factors predicts absolute and differential gene
expression in embryonic stem cells. Proceedings of the
National Academy of Sciences of USA, 106, 21521–21526.
gss documentation built on Oct. 12, 2024, 1:08 a.m.
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| esc | R Documentation |
Embryonic Stem Cell from Mouse
Description
Data concerning mouse embryonic stem cell gene expression and transcription factor association strength.
Usage
data(esc)Format
A data frame containing 1027 genes with the following variables.
y1 | Gene expression after 4 days. |
y2 | Gene expression after 8 days. |
y3 | Gene expression after 14 days. |
klf4 | Score of TFAS with KLF4. |
nanog | Score of TFAS with NANOG. |
oct4 | Score of TFAS with OCT4. |
sox2 | Score of TFAS with SOX2. |
clusterID | Cluster identification. |
References
Cai, J., Xie, D., Fan, Z., Chipperfield, H., Marden, J., Wong, W. H., and Zhong, S. (2010), Modeling co-expression across species for complex traits: insights to the difference of human and mouse embryonic stem cells. PLoS Computational Biology, 6, e1000707.
Ouyang, Z., Zhou, Q., and Wong, W. H. (2009), chip-seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells. Proceedings of the National Academy of Sciences of USA, 106, 21521–21526.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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