karyotype_plot: Karyotype Plot

In gwaRs: Manhattan, Q-Q, and PCA Plots using 'ggplot2'

Description

Creates a Karyotype plot

Usage

karyotype_plot(
  data,
  density.col = c("darkgreen", "yellow", "red"),
  window.size = 1e+06,
  title = NULL
)

Arguments

data	A data.frame with "CHR" and "BP"columns.
density.col	A character vector with colors to use for gradients.
window.size	A double precision numeric value indicating the window size.
title	A string denoting the title to use for the plot. Default is 'Manhattan Plot'

Details

Creates a SNP Karyotype or Density plot from an R dataframe with "CHR" and "BP" columns.

Value

A SNP Karyotype plot.

Author(s)

Lindokuhle Nkambule

Examples

karyotype_plot(gwasData)

gwaRs documentation built on April 20, 2021, 1:07 a.m.