gtest.haplotype_structure: Perform G-test on haplotype structures extracted from...

In gwid: Genome-Wide Identity-by-Descent

Perform G-test on haplotype structures extracted from haplotype_structure function

Description

Perform G-test on haplotype structures extracted from haplotype_structure function

Usage

## S3 method for class 'haplotype_structure'
gtest(haplotype_structure, reference, ...)

Arguments

haplotype_structure	An object of class haplotype_structure. Output of haplotype_structure function.
reference	reference group of subjects in which we want to perform G-test
...	other variables

Value

the output will be a test_snps (data.table) object including 3 columns: “snp_pos”, “case_control”, and “value” which is a p-values.

gwid documentation built on Sept. 11, 2024, 9:04 p.m.