h2o: R Interface for H2O

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R scripting functionality for H2O, the open source math engine for big data that computes parallel distributed machine learning algorithms such as generalized linear models, gradient boosting machines, random forests, and neural networks (deep learning) within various cluster environments.

Author
Spencer Aiello, Tom Kraljevic and Petr Maj, with contributions from the H2O.ai team
Date of publication
2016-10-14 08:16:13
Maintainer
Tom Kraljevic <tomk@0xdata.com>
License
Apache License (== 2.0)
Version
3.10.0.8
URLs

View on CRAN

Man pages

aaa
Starting H2O For examples
and-and
Logical and for H2OFrames
apply
Apply on H2O Datasets
as.character.H2OFrame
Convert an H2OFrame to a String
as.data.frame.H2OFrame
Converts parsed H2O data into an R data frame
as.factor
Convert H2O Data to Factors
as.h2o
R data.frame -> H2OFrame
as.matrix.H2OFrame
Convert an H2OFrame to a matrix
as.numeric
Convert H2O Data to Numeric
as.vector.H2OFrame
Convert an H2OFrame to a vector
australia
Australia Coastal Data
colnames
Returns the column names of an H2OFrame
dim.H2OFrame
Returns the Dimensions of an H2OFrame
dimnames.H2OFrame
Column names of an H2OFrame
h2o.abs
Compute the absolute value of x
h2o.acos
Compute the arc cosine of x
h2o.aic
Retrieve the AIC. If "train", "valid", and "xval" parameters...
h2o.all
Given a set of logical vectors, are all of the values true?
h2o.anomaly
Anomaly Detection via H2O Deep Learning Model
h2o.any
Given a set of logical vectors, is at least one of the values...
h2o.anyFactor
Check H2OFrame columns for factors
h2o.arrange
Sorts H2OFrame by the columns specified. Returns a new...
h2o.ascharacter
Convert H2O Data to Characters
h2o.as_date
Functions to convert between character representations and...
h2o.asfactor
Convert H2O Data to Factors
h2o.asnumeric
Convert H2O Data to Numerics
h2o.assign
Rename an H2O object.
h2o.auc
Retrieve the AUC
h2o.betweenss
Get the between cluster sum of squares. If "train", "valid",...
h2o.biases
Return the respective bias vector
h2o.cbind
Combine H2O Datasets by Columns
h2o.ceiling
ceiling takes a single numeric argument x and returns a...
h2o.centers
Retrieve the Model Centers
h2o.centersSTD
Retrieve the Model Centers STD
h2o.centroid_stats
Retrieve the centroid statistics If "train", "valid", and...
h2o.clearLog
Delete All H2O R Logs
h2o.clusterInfo
Print H2O cluster info
H2OClusteringModel-class
The H2OClusteringModel object.
h2o.clusterIsUp
Determine if an H2O cluster is up or not
h2o.cluster_sizes
Retrieve the cluster sizes If "train", "valid", and "xval"...
h2o.clusterStatus
Return the status of the cluster
h2o.coef
Retrieve the model coefficeints
h2o.coef_norm
Retrieve the normalized coefficients
h2o.colnames
Return column names of an H2OFrame
h2o.columns_by_type
Obtain a list of columns that are specified by 'coltype'
h2o.confusionMatrix
Access H2O Confusion Matrices
H2OConnection-class
The H2OConnection class.
h2o.cor
Correlation of columns.
h2o.cos
Compute the cosine of x
h2o.cosh
Compute the hyperbolic cosine of x
h2o.createFrame
Data H2OFrame Creation in H2O
h2o.cross_validation_fold_assignment
Retrieve the cross-validation fold assignment
h2o.cross_validation_holdout_predictions
Retrieve the cross-validation holdout predictions
h2o.cross_validation_models
Retrieve the cross-validation models
h2o.cross_validation_predictions
Retrieve the cross-validation predictions
h2o.cut
Cut H2O Numeric Data to Factor
h2o.day
Convert Milliseconds to Day of Month in H2O Datasets
h2o.dayOfWeek
Convert Milliseconds to Day of Week in H2O Datasets
h2o.dct
Compute DCT of an H2OFrame
h2o.ddply
Split H2O Dataset, Apply Function, and Return Results
h2o.deepfeatures
Feature Generation via H2O Deep Learning Model
h2o.deeplearning
Build a Deep Neural Network
h2o.describe
H2O Description of A Dataset
h2o.diff
Conduct a lag 1 transform on a numeric H2OFrame column
h2o.dim
Returns the number of rows and columns for an H2OFrame...
h2o.dimnames
Column names of an H2OFrame
h2o.downloadAllLogs
Download H2O Log Files to Disk
h2o.downloadCSV
Download H2O Data to Disk
h2o.download_mojo
Download the model in MOJO format.
h2o.download_pojo
Download the Scoring POJO (Plain Old Java Object) of an H2O...
h2o.entropy
Shannon entropy
h2o.exp
Compute the exponential function of x
h2o.exportFile
Export an H2O Data Frame (H2OFrame) to a File or to a...
h2o.exportHDFS
Export a Model to HDFS
h2o.filterNACols
Filter NA Columns
h2o.find_row_by_threshold
Find the threshold, give the max metric. No duplicate...
h2o.find_threshold_by_max_metric
Find the threshold, give the max metric
h2o.floor
floor takes a single numeric argument x and returns a numeric...
H2OFrame
S3 Group Generic Functions for H2O
H2OFrame-Extract
Extract or Replace Parts of an H2OFrame Object
h2o.gainsLift
Access H2O Gains/Lift Tables
h2o.gbm
Gradient Boosting Machine
h2o.getConnection
Retrieve an H2O Connection
h2o.getFrame
Get an R Reference to an H2O Dataset, that will NOT be GC'd...
h2o.getFutureModel
Get future model
h2o.getGLMFullRegularizationPath
Extract full regularization path from glm model (assuming it...
h2o.getGrid
Get a grid object from H2O distributed K/V store.
h2o.getId
Get back-end distributed key/value store id from an H2OFrame.
h2o.getModel
Get an R reference to an H2O model
h2o.getTimezone
Get the Time Zone on the H2O Cloud Returns a string
h2o.getTypes
Get the types-per-column
h2o.getVersion
Get h2o version
h2o.giniCoef
Retrieve the GINI Coefficcient
h2o.glm
H2O Generalized Linear Models
h2o.glrm
Generalized Low Rank Model
h2o.grid
H2O Grid Support
H2OGrid-class
H2O Grid
h2o.group_by
Group and Apply by Column
h2o.gsub
String Global Substitute
h2o.head
Return the Head or Tail of an H2O Dataset.
h2o.hist
Compute A Histogram
h2o.hit_ratio_table
Retrieve the Hit Ratios If "train", "valid", and "xval"...
h2o.hour
Convert Milliseconds to Hour of Day in H2O Datasets
h2o.ifelse
H2O Apply Conditional Statement
h2o.importFile
Import Files into H2O
h2o.import_sql_select
Import SQL table that is result of SELECT SQL query into H2O
h2o.import_sql_table
Import SQL Table into H2O
h2o.impute
Basic Imputation of H2O Vectors
h2o.init
Initialize and Connect to H2O
h2o.insertMissingValues
Inserting Missing Values to an H2O DataH2OFrame
h2o.interaction
Categorical Interaction Feature Creation in H2O
h2o.ischaracter
Check if character
h2o.is_client
Check Client Mode Connection
h2o.isfactor
Check if factor
h2o.isnumeric
Check if numeric
h2o.kfold_column
Produce a k-fold column vector.
h2o.killMinus3
Dump the stack into the JVM's stdout.
h2o.kmeans
KMeans Model in H2O
h2o.kurtosis
Kurtosis of a column
h2o.levels
Return the levels from the column requested column.
h2o.listTimezones
List all of the Time Zones Acceptable by the H2O Cloud.
h2o.loadModel
Load H2O Model from HDFS or Local Disk
h2o.log
Compute the logarithm of x
h2o.log10
Compute the log10 of x
h2o.log1p
Compute the log1p of x
h2o.log2
Compute the log2 of x
h2o.logAndEcho
Log a message on the server-side logs
h2o.logloss
Retrieve the Log Loss Value
h2o.ls
List Keys on an H2O Cluster
h2o.lstrip
Strip set from left
h2o.mae
Retrieve the Mean Absolute Error Value
h2o.makeGLMModel
Set betas of an existing H2O GLM Model
h2o.make_metrics
Create Model Metrics from predicted and actual values in H2O
h2o.match
Value Matching in H2O
h2o.max
Returns the maxima of the input values.
h2o.mean
Mean of a column
h2o.mean_per_class_error
Retrieve the mean per class error
h2o.mean_residual_deviance
Retrieve the Mean Residual Deviance value
h2o.median
H2O Median
h2o.merge
Merge Two H2O Data Frames
h2o.metric
H2O Model Metric Accessor Functions
h2o.min
Returns the minima of the input values.
h2o.mktime
Compute msec since the Unix Epoch
H2OModel-class
The H2OModel object.
H2OModelFuture-class
H2O Future Model
H2OModelMetrics-class
The H2OModelMetrics Object.
h2o.month
Convert Milliseconds to Months in H2O Datasets
h2o.mse
Retrieves Mean Squared Error Value
h2o.nacnt
Count of NAs per column
h2o.naiveBayes
Naive Bayes Model in H2O
h2o.names
Column names of an H2OFrame
h2o.na_omit
Remove Rows With NAs
h2o.nchar
String length
h2o.ncol
Return the number of columns present in x.
h2o.networkTest
View Network Traffic Speed
h2o.nlevels
Get the number of factor levels for this frame.
h2o.no_progress
Disable Progress Bar
h2o.nrow
Return the number of rows present in x.
h2o.null_deviance
Retrieve the null deviance If "train", "valid", and "xval"...
h2o.null_dof
Retrieve the null degrees of freedom If "train", "valid", and...
h2o.num_iterations
Retrieve the number of iterations.
h2o.num_valid_substrings
Count of substrings >= 2 chars that are contained in file
h2o.openLog
View H2O R Logs
h2o-package
H2O R Interface
h2o.parseRaw
H2O Data Parsing
h2o.parseSetup
Get a parse setup back for the staged data.
h2o.partialPlot
Partial Dependence Plots
h2o.performance
Model Performance Metrics in H2O
h2o.prcomp
Principal Components Analysis
h2o.print
Print An H2OFrame
h2o.prod
Return the product of all the values present in its...
h2o.proj_archetypes
Convert Archetypes to Features from H2O GLRM Model
h2o.quantile
Quantiles of H2O Frames.
h2o.r2
Retrieve the R2 value
h2o.randomForest
Build a Big Data Random Forest Model
h2o.range
Returns a vector containing the minimum and maximum of all...
h2o.rbind
Combine H2O Datasets by Rows
h2o.reconstruct
Reconstruct Training Data via H2O GLRM Model
h2o.relevel
Reorders levels of an H2O factor, similarly to standard R's...
h2o.removeAll
Remove All Objects on the H2O Cluster
h2o.removeVecs
Delete Columns from an H2OFrame
h2o.rep_len
Replicate Elements of Vectors or Lists into H2O
h2o.residual_deviance
Retrieve the residual deviance If "train", "valid", and...
h2o.residual_dof
Retrieve the residual degrees of freedom If "train", "valid",...
h2o.rm
Delete Objects In H2O
h2o.rmse
Retrieves Root Mean Squared Error Value
h2o.rmsle
Retrieve the Root Mean Squared Log Error
h2o.round
Round doubles/floats to the given number of decimal places.
h2o.rstrip
Strip set from right
h2o.runif
Produce a Vector of Random Uniform Numbers
h2o.saveModel
Save an H2O Model Object to Disk
h2o.scale
Scaling and Centering of an H2OFrame
h2o.scoreHistory
Retrieve Model Score History
h2o.sd
Standard Deviation of a column of data.
h2o.sdev
Retrieve the standard deviations of principal components
h2o.setLevels
Set Levels of H2O Factor Column
h2o.setTimezone
Set the Time Zone on the H2O Cloud
h2o.show_progress
Enable Progress Bar
h2o.shutdown
Shut Down H2O Instance
h2o.signif
Round doubles/floats to the given number of significant...
h2o.sin
Compute the sine of x
h2o.skewness
Skewness of a column
h2o.splitFrame
Split an H2O Data Set
h2o.sqrt
Compute the square root of x
h2o.startLogging
Start Writing H2O R Logs
h2o.std_coef_plot
Plot Standardized Coefficient Magnitudes
h2o.stopLogging
Stop Writing H2O R Logs
h2o.str
Display the structure of an H2OFrame object
h2o.strsplit
String Split
h2o.sub
String Substitute
h2o.substring
Substring
h2o.sum
Return the sum of all the values present in its arguments.
h2o.summary
Summarizes the columns of an H2OFrame.
h2o.svd
Singular Value Decomposition
h2o.table
Cross Tabulation and Table Creation in H2O
h2o.tabulate
Tabulation between Two Columns of an H2OFrame
h2o.tan
Compute the tangent of x
h2o.tanh
Compute the hyperbolic tangent of x
h2o.tolower
To Lower
h2o.totss
Get the total sum of squares. If "train", "valid", and "xval"...
h2o.tot_withinss
Get the total within cluster sum of squares. If "train",...
h2o.toupper
To Upper
h2o.trim
Trim Space
h2o.trunc
trunc takes a single numeric argument x and returns a numeric...
h2o.unique
H2O Unique
h2o.var
Variance of a column or covariance of columns.
h2o.varimp
Retrieve the variable importance.
h2o.varimp_plot
Plot Variable Importances
h2o.week
Convert Milliseconds to Week of Week Year in H2O Datasets
h2o.weights
Retrieve the respective weight matrix
h2o.which
Which indices are TRUE?
h2o.withinss
Get the Within SS
h2o.year
Convert Milliseconds to Years in H2O Datasets
housevotes
United States Congressional Voting Records 1984
iris
Edgar Anderson's Iris Data
is.character
Check if character
is.factor
Check if factor
is.numeric
Check if numeric
Logical-or
Logical or for H2OFrames
ModelAccessors
Accessor Methods for H2OModel Object
names.H2OFrame
Column names of an H2OFrame
plot.H2OModel
Plot an H2O Model
plot.H2OTabulate
Plot an H2O Tabulate Heatmap
predict.H2OModel
Predict on an H2O Model
predict_leaf_node_assignment.H2OModel
Predict the Leaf Node Assignment on an H2O Model
print.H2OFrame
Print An H2OFrame
print.H2OTable
Print method for H2OTable objects
prostate
Prostate Cancer Study
range.H2OFrame
Range of an H2O Column
str.H2OFrame
Display the structure of an H2OFrame object
summary-H2OGrid-method
Format grid object in user-friendly way
summary-H2OModel-method
Print the Model Summary
walking
Muscular Actuations for Walking Subject
zzz
Shutdown H2O cloud after examples run

Files in this package

h2o
h2o/inst
h2o/inst/source_code_repository_info.txt
h2o/inst/buildnum.txt
h2o/inst/java
h2o/inst/extdata
h2o/inst/extdata/housevotes.csv
h2o/inst/extdata/prostate_folder
h2o/inst/extdata/prostate_folder/prostate.p2.csv
h2o/inst/extdata/prostate_folder/prostate.p1.csv
h2o/inst/extdata/prostate_folder/prostate.p3.csv
h2o/inst/extdata/australia.csv
h2o/inst/extdata/iris_header.csv
h2o/inst/extdata/walking.csv
h2o/inst/extdata/iris.csv
h2o/inst/extdata/prostate.csv
h2o/inst/extdata/iris_wheader.csv
h2o/inst/branch.txt
h2o/NAMESPACE
h2o/demo
h2o/demo/h2o.prcomp.R
h2o/demo/h2o.glrm.R
h2o/demo/h2o.naiveBayes.R
h2o/demo/00Index
h2o/demo/h2o.glm.R
h2o/demo/h2o.randomForest.R
h2o/demo/h2o.anomaly.R
h2o/demo/h2o.gbm.R
h2o/demo/h2o.kmeans.R
h2o/demo/h2o.deeplearning.R
h2o/NEWS
h2o/R
h2o/R/classes.R
h2o/R/connection.R
h2o/R/pca.R
h2o/R/word2vec.R
h2o/R/frame.R
h2o/R/models.R
h2o/R/kmeans.R
h2o/R/randomforest.R
h2o/R/kvstore.R
h2o/R/communication.R
h2o/R/glm.R
h2o/R/logging.R
h2o/R/edicts.R
h2o/R/import.R
h2o/R/locate.R
h2o/R/parse.R
h2o/R/gbm.R
h2o/R/export.R
h2o/R/deeplearning.R
h2o/R/astfun.R
h2o/R/constants.R
h2o/R/glrm.R
h2o/R/naivebayes.R
h2o/R/grid.R
h2o/R/datasets.R
h2o/R/svd.R
h2o/R/zzz.R
h2o/MD5
h2o/DESCRIPTION
h2o/man
h2o/man/h2o.is_client.Rd
h2o/man/h2o.naiveBayes.Rd
h2o/man/aaa.Rd
h2o/man/h2o.getGrid.Rd
h2o/man/h2o.mean.Rd
h2o/man/h2o.substring.Rd
h2o/man/h2o.merge.Rd
h2o/man/h2o.removeAll.Rd
h2o/man/h2o.sub.Rd
h2o/man/h2o.svd.Rd
h2o/man/h2o.loadModel.Rd
h2o/man/h2o.tabulate.Rd
h2o/man/h2o.tot_withinss.Rd
h2o/man/h2o.signif.Rd
h2o/man/h2o.cross_validation_models.Rd
h2o/man/h2o.sqrt.Rd
h2o/man/H2OFrame.Rd
h2o/man/h2o.cluster_sizes.Rd
h2o/man/h2o.tan.Rd
h2o/man/h2o.asfactor.Rd
h2o/man/H2OGrid-class.Rd
h2o/man/h2o.filterNACols.Rd
h2o/man/iris.Rd
h2o/man/h2o.ls.Rd
h2o/man/h2o.exportHDFS.Rd
h2o/man/h2o.parseRaw.Rd
h2o/man/Logical-or.Rd
h2o/man/walking.Rd
h2o/man/h2o.logAndEcho.Rd
h2o/man/h2o.log10.Rd
h2o/man/h2o.coef.Rd
h2o/man/as.numeric.Rd
h2o/man/h2o.log2.Rd
h2o/man/h2o.ceiling.Rd
h2o/man/h2o.table.Rd
h2o/man/dim.H2OFrame.Rd
h2o/man/h2o.cos.Rd
h2o/man/h2o.cross_validation_predictions.Rd
h2o/man/summary-H2OModel-method.Rd
h2o/man/and-and.Rd
h2o/man/h2o.makeGLMModel.Rd
h2o/man/is.character.Rd
h2o/man/h2o.entropy.Rd
h2o/man/h2o.cosh.Rd
h2o/man/h2o.day.Rd
h2o/man/h2o.min.Rd
h2o/man/h2o.weights.Rd
h2o/man/h2o.assign.Rd
h2o/man/h2o.max.Rd
h2o/man/h2o.mean_residual_deviance.Rd
h2o/man/h2o.download_pojo.Rd
h2o/man/print.H2OFrame.Rd
h2o/man/h2o.num_iterations.Rd
h2o/man/h2o.std_coef_plot.Rd
h2o/man/h2o.runif.Rd
h2o/man/h2o.cross_validation_fold_assignment.Rd
h2o/man/h2o.createFrame.Rd
h2o/man/h2o.num_valid_substrings.Rd
h2o/man/h2o.startLogging.Rd
h2o/man/australia.Rd
h2o/man/h2o.listTimezones.Rd
h2o/man/h2o.randomForest.Rd
h2o/man/h2o.na_omit.Rd
h2o/man/h2o.nlevels.Rd
h2o/man/as.vector.H2OFrame.Rd
h2o/man/h2o.anomaly.Rd
h2o/man/h2o.make_metrics.Rd
h2o/man/h2o.centersSTD.Rd
h2o/man/h2o.centroid_stats.Rd
h2o/man/h2o.sd.Rd
h2o/man/h2o.networkTest.Rd
h2o/man/h2o.kmeans.Rd
h2o/man/h2o.clusterInfo.Rd
h2o/man/h2o.interaction.Rd
h2o/man/h2o.getId.Rd
h2o/man/h2o.rbind.Rd
h2o/man/h2o.scoreHistory.Rd
h2o/man/h2o.removeVecs.Rd
h2o/man/plot.H2OTabulate.Rd
h2o/man/h2o.find_row_by_threshold.Rd
h2o/man/h2o.giniCoef.Rd
h2o/man/h2o.rmse.Rd
h2o/man/h2o.kurtosis.Rd
h2o/man/h2o.partialPlot.Rd
h2o/man/h2o.rstrip.Rd
h2o/man/h2o.withinss.Rd
h2o/man/h2o.gainsLift.Rd
h2o/man/h2o.null_deviance.Rd
h2o/man/as.character.H2OFrame.Rd
h2o/man/h2o.hist.Rd
h2o/man/h2o.hit_ratio_table.Rd
h2o/man/h2o.median.Rd
h2o/man/h2o.varimp_plot.Rd
h2o/man/h2o.asnumeric.Rd
h2o/man/h2o.sdev.Rd
h2o/man/h2o.colnames.Rd
h2o/man/H2OFrame-Extract.Rd
h2o/man/h2o.downloadAllLogs.Rd
h2o/man/h2o.show_progress.Rd
h2o/man/h2o-package.Rd
h2o/man/is.numeric.Rd
h2o/man/h2o.no_progress.Rd
h2o/man/h2o.exp.Rd
h2o/man/h2o.names.Rd
h2o/man/h2o.deeplearning.Rd
h2o/man/h2o.log.Rd
h2o/man/h2o.mse.Rd
h2o/man/h2o.gsub.Rd
h2o/man/print.H2OTable.Rd
h2o/man/is.factor.Rd
h2o/man/h2o.ischaracter.Rd
h2o/man/h2o.trim.Rd
h2o/man/h2o.cut.Rd
h2o/man/h2o.rep_len.Rd
h2o/man/as.matrix.H2OFrame.Rd
h2o/man/h2o.getFutureModel.Rd
h2o/man/h2o.trunc.Rd
h2o/man/h2o.acos.Rd
h2o/man/h2o.varimp.Rd
h2o/man/h2o.glm.Rd
h2o/man/h2o.diff.Rd
h2o/man/h2o.insertMissingValues.Rd
h2o/man/h2o.getConnection.Rd
h2o/man/h2o.which.Rd
h2o/man/h2o.year.Rd
h2o/man/h2o.coef_norm.Rd
h2o/man/h2o.nrow.Rd
h2o/man/h2o.match.Rd
h2o/man/h2o.range.Rd
h2o/man/h2o.abs.Rd
h2o/man/h2o.r2.Rd
h2o/man/h2o.group_by.Rd
h2o/man/h2o.sum.Rd
h2o/man/h2o.reconstruct.Rd
h2o/man/h2o.betweenss.Rd
h2o/man/h2o.str.Rd
h2o/man/h2o.hour.Rd
h2o/man/h2o.levels.Rd
h2o/man/h2o.aic.Rd
h2o/man/h2o.residual_deviance.Rd
h2o/man/h2o.mean_per_class_error.Rd
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