hamlet: Hierarchical Optimal Matching and Machine Learning Toolbox

Various functions and algorithms are provided here for solving optimal matching tasks in the context of preclinical cancer studies. Further, various helper and plotting functions are provided for unsupervised and supervised machine learning as well as longitudinal mixed-effects modeling of tumor growth response patterns.

Install the latest version of this package by entering the following in R:
install.packages("hamlet")
AuthorTeemu Daniel Laajala <teelaa@utu.fi>
Date of publication2016-10-25 10:30:32
MaintainerTeemu Daniel Laajala <teelaa@utu.fi>
LicenseGPL (>= 2)
Version0.9.5

View on CRAN

Man pages

extendsymrange: Extend range of variable limits while retaining a point of...

hamlet-package: Hierarchical Optimal Matching and Machine Learning Toolbox

hmap: Plot-region based heatmap

hmap.annotate: Add a row and column annotations to a plot-region based...

hmap.key: Add a color key to a plot-region based heatmap built with...

match.allocate: Allocation of matched units to intervention arms

match.bb: Branch and Bound algorithm implementation for performing...

match.dummy: Create dummy individuals or sinks to a data matrix or a...

match.ga: Non-bipartite matching using the Genetic Algorithm (GA)

match.mat2vec: Transform a binary matching matrix to a matching vector

match.vec2mat: Transform a matching vector to a binary matching matrix

mem.getcomp: Extract per-observation components for fixed and random...

mem.plotran: Plot random effects histograms for a fitted mixed-effects...

mem.plotresid: Plot residuals of a mixed-effects model along with trend...

mem.powersimu: Power simulations for the fixed effects of a mixed-effects...

mix.binary: Binary coding of categorical variables

mix.fun: Apply function to numerical columns of a mixed data.frame...

mixplot: Scatterplot for mixed type data

orxlong: Long-format longitudinal data for the ORX study

orxwide: Wide-format baseline data for the ORX study

smartjitter: Smart jittering function for deterministic shifting of...

vcaplong: Long-format data of the Castration-resistant Prostate Cancer...

vcapwide: Wide-format data of the Castration-resistant Prostate Cancer...

Functions

extendsymrange Man page
hamlet Man page
hamlet-package Man page
hmap Man page
hmap.annotate Man page
hmap.key Man page
match.allocate Man page
match.bb Man page
match.dummy Man page
match.ga Man page
match.mat2vec Man page
match.vec2mat Man page
mem.getcomp Man page
mem.plotran Man page
mem.plotresid Man page
mem.powersimu Man page
mix.binary Man page
mix.fun Man page
mixplot Man page
orxlong Man page
orxwide Man page
smartjitter Man page
vcaplong Man page
vcapwide Man page

Files

inst
inst/CITATION
inst/doc
inst/doc/introduction.Rnw
inst/doc/introduction.R
inst/doc/introduction.pdf
NAMESPACE
data
data/orxwide.rda
data/vcapwide.rda
data/orxlong.rda
data/vcaplong.rda
R
R/mixtools.R R/internal.R R/matchtools.R R/plottools.R R/simurun.R R/memtools.R
vignettes
vignettes/introduction-016.pdf
vignettes/introduction-007.pdf
vignettes/workflow.pdf
vignettes/introduction-019.pdf
vignettes/example.csv
vignettes/excelexample.JPG
vignettes/introduction-020.pdf
vignettes/introduction.Rnw
vignettes/introduction-023.pdf
vignettes/introduction-017.pdf
vignettes/introduction-013.pdf
vignettes/introduction-022.pdf
vignettes/introduction-014.pdf
MD5
build
build/vignette.rds
DESCRIPTION
man
man/hmap.annotate.Rd
man/figures
man/figures/hmapex.pdf
man/figures/hmapex.png
man/mixplot.Rd man/hmap.Rd man/hmap.key.Rd man/vcapwide.Rd man/match.allocate.Rd man/match.dummy.Rd man/mem.plotresid.Rd man/orxwide.Rd man/smartjitter.Rd man/mem.powersimu.Rd man/match.mat2vec.Rd man/orxlong.Rd man/vcaplong.Rd man/hamlet-package.Rd man/match.bb.Rd man/mix.binary.Rd man/match.vec2mat.Rd man/mix.fun.Rd man/match.ga.Rd man/mem.getcomp.Rd man/mem.plotran.Rd man/extendsymrange.Rd
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Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.