hamlet: Hierarchical Optimal Matching and Machine Learning Toolbox

Various functions and algorithms are provided here for solving optimal matching tasks in the context of preclinical cancer studies. Further, various helper and plotting functions are provided for unsupervised and supervised machine learning as well as longitudinal mixed-effects modeling of tumor growth response patterns.

AuthorTeemu Daniel Laajala <teelaa@utu.fi>
Date of publication2016-10-25 10:30:32
MaintainerTeemu Daniel Laajala <teelaa@utu.fi>
LicenseGPL (>= 2)
Version0.9.5

View on CRAN

Man pages

extendsymrange: Extend range of variable limits while retaining a point of...

hamlet-package: Hierarchical Optimal Matching and Machine Learning Toolbox

hmap: Plot-region based heatmap

hmap.annotate: Add a row and column annotations to a plot-region based...

hmap.key: Add a color key to a plot-region based heatmap built with...

match.allocate: Allocation of matched units to intervention arms

match.bb: Branch and Bound algorithm implementation for performing...

match.dummy: Create dummy individuals or sinks to a data matrix or a...

match.ga: Non-bipartite matching using the Genetic Algorithm (GA)

match.mat2vec: Transform a binary matching matrix to a matching vector

match.vec2mat: Transform a matching vector to a binary matching matrix

mem.getcomp: Extract per-observation components for fixed and random...

mem.plotran: Plot random effects histograms for a fitted mixed-effects...

mem.plotresid: Plot residuals of a mixed-effects model along with trend...

mem.powersimu: Power simulations for the fixed effects of a mixed-effects...

mix.binary: Binary coding of categorical variables

mix.fun: Apply function to numerical columns of a mixed data.frame...

mixplot: Scatterplot for mixed type data

orxlong: Long-format longitudinal data for the ORX study

orxwide: Wide-format baseline data for the ORX study

smartjitter: Smart jittering function for deterministic shifting of...

vcaplong: Long-format data of the Castration-resistant Prostate Cancer...

vcapwide: Wide-format data of the Castration-resistant Prostate Cancer...

Files in this package

hamlet
hamlet/inst
hamlet/inst/CITATION
hamlet/inst/doc
hamlet/inst/doc/introduction.Rnw
hamlet/inst/doc/introduction.R
hamlet/inst/doc/introduction.pdf
hamlet/NAMESPACE
hamlet/data
hamlet/data/orxwide.rda
hamlet/data/vcapwide.rda
hamlet/data/orxlong.rda
hamlet/data/vcaplong.rda
hamlet/R
hamlet/R/mixtools.R hamlet/R/internal.R hamlet/R/matchtools.R hamlet/R/plottools.R hamlet/R/simurun.R hamlet/R/memtools.R
hamlet/vignettes
hamlet/vignettes/introduction-016.pdf
hamlet/vignettes/introduction-007.pdf
hamlet/vignettes/workflow.pdf
hamlet/vignettes/introduction-019.pdf
hamlet/vignettes/example.csv
hamlet/vignettes/excelexample.JPG
hamlet/vignettes/introduction-020.pdf
hamlet/vignettes/introduction.Rnw
hamlet/vignettes/introduction-023.pdf
hamlet/vignettes/introduction-017.pdf
hamlet/vignettes/introduction-013.pdf
hamlet/vignettes/introduction-022.pdf
hamlet/vignettes/introduction-014.pdf
hamlet/MD5
hamlet/build
hamlet/build/vignette.rds
hamlet/DESCRIPTION
hamlet/man
hamlet/man/hmap.annotate.Rd
hamlet/man/figures
hamlet/man/figures/hmapex.pdf
hamlet/man/figures/hmapex.png
hamlet/man/mixplot.Rd hamlet/man/hmap.Rd hamlet/man/hmap.key.Rd hamlet/man/vcapwide.Rd hamlet/man/match.allocate.Rd hamlet/man/match.dummy.Rd hamlet/man/mem.plotresid.Rd hamlet/man/orxwide.Rd hamlet/man/smartjitter.Rd hamlet/man/mem.powersimu.Rd hamlet/man/match.mat2vec.Rd hamlet/man/orxlong.Rd hamlet/man/vcaplong.Rd hamlet/man/hamlet-package.Rd hamlet/man/match.bb.Rd hamlet/man/mix.binary.Rd hamlet/man/match.vec2mat.Rd hamlet/man/mix.fun.Rd hamlet/man/match.ga.Rd hamlet/man/mem.getcomp.Rd hamlet/man/mem.plotran.Rd hamlet/man/extendsymrange.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.