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hapassoc: Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm
The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs.
Getting started
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Package details |
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| Author | K. Burkett <kburkett@uottawa.ca>, B. McNeney <mcneney@sfu.ca>, J. Graham <jgraham@stat.sfu.ca>, with code for case-control data contributed by Zhijian Chen <z11chen@math.uwaterloo.ca> |
| Maintainer | K. Burkett <kburkett@uottawa.ca> |
| License | GPL-2 |
| Version | 1.2-9 |
| URL | https://sfustatgen.github.io/research/hapassoc.html |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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