hapassoc: Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm

The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs.

Getting started

Package details

AuthorK. Burkett <[email protected]>, B. McNeney <[email protected]>, J. Graham <[email protected]>, with code for case-control data contributed by Zhijian Chen <[email protected]>
MaintainerK. Burkett <[email protected]>
URL http://stat.sfu.ca/statgen/research/hapassoc.html
Package repositoryView on CRAN
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hapassoc documentation built on May 29, 2017, 9:19 p.m.