hapassoc: Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm

The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs.

AuthorK. Burkett <kburkett@uottawa.ca>, B. McNeney <mcneney@sfu.ca>, J. Graham <jgraham@stat.sfu.ca>, with code for case-control data contributed by Zhijian Chen <z11chen@math.uwaterloo.ca>
Date of publication2015-05-11 00:22:30
MaintainerK. Burkett <kburkett@uottawa.ca>
LicenseGPL-2
Version1.2-8
http://stat.sfu.ca/statgen/research/hapassoc.html

View on CRAN

Files in this package

hapassoc
hapassoc/inst
hapassoc/inst/CITATION
hapassoc/inst/ChangeLog
hapassoc/inst/doc
hapassoc/inst/doc/hapassoc.R
hapassoc/inst/doc/hapassoc.Rnw
hapassoc/inst/doc/hapassoc.pdf
hapassoc/src
hapassoc/src/getWts.c
hapassoc/src/tapply_sum.c
hapassoc/NAMESPACE
hapassoc/data
hapassoc/data/hypoDat.txt.gz
hapassoc/data/hypoDatGeno.txt.gz
hapassoc/R
hapassoc/R/hapassoc.R hapassoc/R/RecodeHaplos.R hapassoc/R/summaryHap.R hapassoc/R/logLik_hapassoc.R hapassoc/R/PreHap.R hapassoc/R/zzz.R
hapassoc/vignettes
hapassoc/vignettes/hapassoc.Rnw
hapassoc/vignettes/burkett_biblio.bib
hapassoc/vignettes/jsslogo.jpg
hapassoc/MD5
hapassoc/build
hapassoc/build/vignette.rds
hapassoc/DESCRIPTION
hapassoc/man
hapassoc/man/hypoDat.Rd hapassoc/man/summaryHap.Rd hapassoc/man/anova_hapassoc.Rd hapassoc/man/PreHap.Rd hapassoc/man/hypoDatGeno.Rd hapassoc/man/hapassoc.Rd hapassoc/man/logLik_hapassoc.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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