API for hapassoc
Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm
| Global functions | |
|---|---|
| .onLoad | Source code |
| .onUnload | Source code |
| EMnull | Source code |
| EMnullPHASE | Source code |
| EMvar | Source code |
| IPhi | Source code |
| IPhiGamma | Source code |
| IPhiGaussian | Source code |
| RecodeHaplos | Source code |
| SPhi | Source code |
| SPhiGamma | Source code |
| SPhiGaussian | Source code |
| anova.hapassoc | Man page Source code |
| codeHaploDM | Source code |
| get.diplofreq | Source code |
| getHaplos | Source code |
| getPhenos | Source code |
| handleMissings | Source code |
| hapassoc | Man page Source code |
| hypoDat | Man page |
| hypoDatGeno | Man page |
| isHetero | Source code |
| isIn | Source code |
| isMissing | Source code |
| isMultiHetero | Source code |
| logLik.hapassoc | Man page Source code |
| loglikelihood | Source code |
| makeHaploLab | Source code |
| makeHaploLabN | Source code |
| mlPhi | Source code |
| mlPhiGamma | Source code |
| momentPhiGamma | Source code |
| pYgivenX | Source code |
| pre.hapassoc | Man page Source code |
| print.summary.hapassoc | Source code |
| probY | Source code |
| r.Omega | Source code |
| summary.hapassoc | Man page Source code |
