haplo.ccs: Estimate Haplotype Relative Risks in Case-Control Data
Version 1.3.1

'haplo.ccs' estimates haplotype and covariate relative risks in case-control data by weighted logistic regression. Diplotype probabilities, which are estimated by EM computation with progressive insertion of loci, are utilized as weights.

AuthorBenjamin French and Thomas Lumley
Date of publication2012-10-29 08:58:55
MaintainerBenjamin French <bcfrench@upenn.edu>
LicenseGPL (>= 2)
Version1.3.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("haplo.ccs")

Popular man pages

haplo: Specify an Allele Matrix, Inheritance Mode, and Grouping for...
haplo.ccs: Estimate Haplotype Relative Risks in Case-Control Data
haplo.hpp: Obtain Summaries of Phase Ambiguity
renin: Example Dataset for 'haplo.ccs'
sandcov: Compute Sandwich Variance-Covariance Estimates
See all...

All man pages Function index File listing

Man pages

haplo: Specify an Allele Matrix, Inheritance Mode, and Grouping for...
haplo.ccs: Estimate Haplotype Relative Risks in Case-Control Data
haplo.hpp: Obtain Summaries of Phase Ambiguity
renin: Example Dataset for 'haplo.ccs'
sandcov: Compute Sandwich Variance-Covariance Estimates

Functions

AIC.haplo.ccs Man page Source code
age Man page
anova.haplo.ccs Man page Source code
case Man page
coef.haplo.ccs Man page Source code
count.haps Man page Source code
fitted.haplo.ccs Man page Source code
gender Man page
geno Man page
haplo Man page Source code
haplo.ccs Man page Source code
haplo.ccs.fit Man page Source code
haplo.freq Man page Source code
haplo.hpp Man page Source code
logLik.haplo.ccs Man page Source code
one Man page Source code
print.haplo.ccs Man page Source code
print.summary.haplo.ccs Man page Source code
race Man page
renin Man page
residuals.haplo.ccs Man page Source code
return.haps Man page Source code
sandcov Man page Source code
summary.haplo.ccs Man page Source code
vcov.haplo.ccs Man page Source code

Files

data
data/renin.RData
README
NAMESPACE
man
man/haplo.hpp.Rd
man/haplo.Rd
man/renin.Rd
man/sandcov.Rd
man/haplo.ccs.Rd
DESCRIPTION
MD5
R
R/haplo.ccs.R
haplo.ccs documentation built on May 19, 2017, 9:59 a.m.

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