'haplo.ccs' estimates haplotype and covariate relative risks in case-control data by weighted logistic regression. Diplotype probabilities, which are estimated by EM computation with progressive insertion of loci, are utilized as weights.
| Author | Benjamin French and Thomas Lumley |
| Date of publication | 2012-10-29 08:58:55 |
| Maintainer | Benjamin French <bcfrench@upenn.edu> |
| License | GPL (>= 2) |
| Version | 1.3.1 |
| Package repository | View on CRAN |
| Installation | Install the latest version of this package by entering the following in R:
|
All man pages Function index File listing
Man pages | |
|---|---|
| haplo: Specify an Allele Matrix, Inheritance Mode, and Grouping for... | |
| haplo.ccs: Estimate Haplotype Relative Risks in Case-Control Data | |
| haplo.hpp: Obtain Summaries of Phase Ambiguity | |
| renin: Example Dataset for 'haplo.ccs' | |
| sandcov: Compute Sandwich Variance-Covariance Estimates | |
Functions | |
|---|---|
| AIC.haplo.ccs | Man page Source code |
| age | Man page |
| anova.haplo.ccs | Man page Source code |
| case | Man page |
| coef.haplo.ccs | Man page Source code |
| count.haps | Man page Source code |
| fitted.haplo.ccs | Man page Source code |
| gender | Man page |
| geno | Man page |
| haplo | Man page Source code |
| haplo.ccs | Man page Source code |
| haplo.ccs.fit | Man page Source code |
| haplo.freq | Man page Source code |
| haplo.hpp | Man page Source code |
| logLik.haplo.ccs | Man page Source code |
| one | Man page Source code |
| print.haplo.ccs | Man page Source code |
| print.summary.haplo.ccs | Man page Source code |
| race | Man page |
| renin | Man page |
| residuals.haplo.ccs | Man page Source code |
| return.haps | Man page Source code |
| sandcov | Man page Source code |
| summary.haplo.ccs | Man page Source code |
| vcov.haplo.ccs | Man page Source code |
Files | |
|---|---|
|
data
| |
|
data/renin.RData
| |
|
README
| |
|
NAMESPACE
| |
|
man
| |
| man/haplo.hpp.Rd | |
| man/haplo.Rd | |
| man/renin.Rd | |
| man/sandcov.Rd | |
| man/haplo.ccs.Rd | |
|
DESCRIPTION
| |
|
MD5
| |
|
R
| |
| R/haplo.ccs.R | |
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