haplo.ccs: Estimate Haplotype Relative Risks in Case-Control Data

'haplo.ccs' estimates haplotype and covariate relative risks in case-control data by weighted logistic regression. Diplotype probabilities, which are estimated by EM computation with progressive insertion of loci, are utilized as weights.

AuthorBenjamin French and Thomas Lumley
Date of publication2012-10-29 08:58:55
MaintainerBenjamin French <bcfrench@upenn.edu>
LicenseGPL (>= 2)
Version1.3.1

View on CRAN

Functions

age Man page
AIC.haplo.ccs Man page
anova.haplo.ccs Man page
case Man page
coef.haplo.ccs Man page
count.haps Man page
fitted.haplo.ccs Man page
gender Man page
geno Man page
haplo Man page
haplo.ccs Man page
haplo.ccs.fit Man page
haplo.freq Man page
haplo.hpp Man page
logLik.haplo.ccs Man page
one Man page
print.haplo.ccs Man page
print.summary.haplo.ccs Man page
race Man page
renin Man page
residuals.haplo.ccs Man page
return.haps Man page
sandcov Man page
summary.haplo.ccs Man page
vcov.haplo.ccs Man page

Files

haplo.ccs
haplo.ccs/data
haplo.ccs/data/renin.RData
haplo.ccs/README
haplo.ccs/NAMESPACE
haplo.ccs/man
haplo.ccs/man/haplo.hpp.Rd haplo.ccs/man/haplo.Rd haplo.ccs/man/renin.Rd haplo.ccs/man/sandcov.Rd haplo.ccs/man/haplo.ccs.Rd
haplo.ccs/DESCRIPTION
haplo.ccs/MD5
haplo.ccs/R
haplo.ccs/R/haplo.ccs.R

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.