haplo.ccs: Estimate Haplotype Relative Risks in Case-Control Data

'haplo.ccs' estimates haplotype and covariate relative risks in case-control data by weighted logistic regression. Diplotype probabilities, which are estimated by EM computation with progressive insertion of loci, are utilized as weights.

Author
Benjamin French and Thomas Lumley
Date of publication
2012-10-29 08:58:55
Maintainer
Benjamin French <bcfrench@upenn.edu>
License
GPL (>= 2)
Version
1.3.1

View on CRAN

Man pages

haplo
Specify an Allele Matrix, Inheritance Mode, and Grouping for...
haplo.ccs
Estimate Haplotype Relative Risks in Case-Control Data
haplo.hpp
Obtain Summaries of Phase Ambiguity
renin
Example Dataset for 'haplo.ccs'
sandcov
Compute Sandwich Variance-Covariance Estimates

Files in this package

haplo.ccs
haplo.ccs/data
haplo.ccs/data/renin.RData
haplo.ccs/README
haplo.ccs/NAMESPACE
haplo.ccs/man
haplo.ccs/man/haplo.hpp.Rd
haplo.ccs/man/haplo.Rd
haplo.ccs/man/renin.Rd
haplo.ccs/man/sandcov.Rd
haplo.ccs/man/haplo.ccs.Rd
haplo.ccs/DESCRIPTION
haplo.ccs/MD5
haplo.ccs/R
haplo.ccs/R/haplo.ccs.R